Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.54□□□□□ -1.84
HOXC11O43248 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC3.54□□□□□ -1.84
HOXC11O43248 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.54□□□□□ -1.84
HOXC11O43248 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.54□□□□□ -1.84
HOXC11O43248 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.54□□□□□ -1.84
HOXC11O43248 AC024909.2-201ENST00000553035 286 ntBASIC3.54□□□□□ -1.84
HOXC11O43248 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC3.54□□□□□ -1.84
HOXC11O43248 AMZ2P1-203ENST00000565833 850 ntBASIC3.54□□□□□ -1.84
HOXC11O43248 AC012213.3-201ENST00000577199 777 ntBASIC3.54□□□□□ -1.84
HOXC11O43248 MIR4528-201ENST00000577763 90 ntBASIC3.54□□□□□ -1.84
HOXC11O43248 MIR3167-201ENST00000579623 85 ntBASIC3.54□□□□□ -1.84
HOXC11O43248 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC3.54□□□□□ -1.84
HOXC11O43248 AC006557.5-201ENST00000603126 811 ntBASIC3.54□□□□□ -1.84
HOXC11O43248 AL133393.1-201ENST00000603277 287 ntBASIC3.54□□□□□ -1.84
HOXC11O43248 YPEL5P2-201ENST00000605553 359 ntBASIC3.54□□□□□ -1.84
HOXC11O43248 AP002360.4-201ENST00000606980 481 ntBASIC3.54□□□□□ -1.84
HOXC11O43248 AC093783.1-201ENST00000612976 329 ntBASIC3.54□□□□□ -1.84
HOXC11O43248 PSMD5-AS1-215ENST00000640622 205 ntBASIC3.54□□□□□ -1.84
HOXC11O43248 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
HOXC11O43248 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
HOXC11O43248 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
HOXC11O43248 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
HOXC11O43248 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.53□□□□□ -1.84
HOXC11O43248 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.53□□□□□ -1.84
HOXC11O43248 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
HOXC11O43248 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.53□□□□□ -1.84
HOXC11O43248 UBE2L2-201ENST00000254302 429 ntBASIC3.53□□□□□ -1.84
HOXC11O43248 RNU6-348P-201ENST00000384386 107 ntBASIC3.53□□□□□ -1.84
HOXC11O43248 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.53□□□□□ -1.84
HOXC11O43248 CDK8P2-201ENST00000415020 547 ntBASIC3.53□□□□□ -1.84
HOXC11O43248 RPS15AP6-201ENST00000420703 385 ntBASIC3.53□□□□□ -1.84
HOXC11O43248 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC3.53□□□□□ -1.84
HOXC11O43248 HMGB3P12-201ENST00000438745 556 ntBASIC3.53□□□□□ -1.84
HOXC11O43248 AC010099.1-201ENST00000455434 375 ntBASIC3.53□□□□□ -1.84
HOXC11O43248 AL031183.1-201ENST00000457667 207 ntBASIC3.53□□□□□ -1.84
HOXC11O43248 snoU13.28-201ENST00000459235 104 ntBASIC3.53□□□□□ -1.84
HOXC11O43248 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXC11O43248 AC079140.3-201ENST00000511111 550 ntBASIC3.53□□□□□ -1.84
HOXC11O43248 AC022447.1-201ENST00000515358 464 ntBASIC3.53□□□□□ -1.84
HOXC11O43248 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXC11O43248 SNORA31.3-201ENST00000516029 96 ntBASIC3.53□□□□□ -1.84
HOXC11O43248 RN7SKP60-201ENST00000516985 239 ntBASIC3.53□□□□□ -1.84
HOXC11O43248 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.53□□□□□ -1.84
HOXC11O43248 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC3.53□□□□□ -1.84
HOXC11O43248 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXC11O43248 AC067852.3-201ENST00000589177 561 ntBASIC3.53□□□□□ -1.84
HOXC11O43248 GLUD1P4-201ENST00000590914 418 ntBASIC3.53□□□□□ -1.84
HOXC11O43248 AC015871.2-201ENST00000603605 948 ntBASIC3.53□□□□□ -1.84
HOXC11O43248 AC007363.1-201ENST00000604736 620 ntBASIC3.53□□□□□ -1.84
HOXC11O43248 AC007619.2-201ENST00000605743 379 ntBASIC3.53□□□□□ -1.84
HOXC11O43248 AC245008.1-201ENST00000608123 476 ntBASIC3.53□□□□□ -1.84
HOXC11O43248 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
HOXC11O43248 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
HOXC11O43248 MTND5P29-201ENST00000458676 1807 ntBASIC3.53□□□□□ -1.84
HOXC11O43248 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.85
HOXC11O43248 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.52□□□□□ -1.85
HOXC11O43248 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.52□□□□□ -1.85
HOXC11O43248 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXC11O43248 RNU6-283P-201ENST00000364788 107 ntBASIC3.52□□□□□ -1.85
HOXC11O43248 Y_RNA.359-201ENST00000365498 102 ntBASIC3.52□□□□□ -1.85
HOXC11O43248 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXC11O43248 RNU6-1042P-201ENST00000384204 107 ntBASIC3.52□□□□□ -1.85
HOXC11O43248 RNU6-817P-201ENST00000391083 104 ntBASIC3.52□□□□□ -1.85
HOXC11O43248 RNA5SP252-201ENST00000391131 119 ntBASIC3.52□□□□□ -1.85
HOXC11O43248 BX323014.1-201ENST00000412876 237 ntBASIC3.52□□□□□ -1.85
HOXC11O43248 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.52□□□□□ -1.85
HOXC11O43248 HSPE1P1-201ENST00000421494 318 ntBASIC3.52□□□□□ -1.85
HOXC11O43248 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC3.52□□□□□ -1.85
HOXC11O43248 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC3.52□□□□□ -1.85
HOXC11O43248 TRIAP1P1-201ENST00000427062 225 ntBASIC3.52□□□□□ -1.85
HOXC11O43248 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.52□□□□□ -1.85
HOXC11O43248 DPPA2P1-201ENST00000428060 556 ntBASIC3.52□□□□□ -1.85
HOXC11O43248 AC093106.2-201ENST00000428212 385 ntBASIC3.52□□□□□ -1.85
HOXC11O43248 RPL31P35-201ENST00000431058 377 ntBASIC3.52□□□□□ -1.85
HOXC11O43248 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC3.52□□□□□ -1.85
HOXC11O43248 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXC11O43248 AL353706.1-201ENST00000436728 494 ntBASIC3.52□□□□□ -1.85
HOXC11O43248 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXC11O43248 DDX3P2-201ENST00000446138 111 ntBASIC3.52□□□□□ -1.85
HOXC11O43248 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXC11O43248 MTCO2P18-201ENST00000457151 658 ntBASIC3.52□□□□□ -1.85
HOXC11O43248 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXC11O43248 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.52□□□□□ -1.85
HOXC11O43248 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC3.52□□□□□ -1.85
HOXC11O43248 RNU6-677P-201ENST00000516914 101 ntBASIC3.52□□□□□ -1.85
HOXC11O43248 RNU6-143P-201ENST00000516942 93 ntBASIC3.52□□□□□ -1.85
HOXC11O43248 RN7SKP57-201ENST00000517248 293 ntBASIC3.52□□□□□ -1.85
HOXC11O43248 AP006245.1-201ENST00000522549 120 ntBASIC3.52□□□□□ -1.85
HOXC11O43248 MGST1-215ENST00000540056 546 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXC11O43248 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXC11O43248 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC3.52□□□□□ -1.85
HOXC11O43248 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXC11O43248 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXC11O43248 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXC11O43248 AC068790.2-201ENST00000602601 557 ntBASIC3.52□□□□□ -1.85
HOXC11O43248 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXC11O43248 AC098826.3-201ENST00000603823 466 ntBASIC3.52□□□□□ -1.85
HOXC11O43248 AC136601.2-201ENST00000604356 474 ntBASIC3.52□□□□□ -1.85
HOXC11O43248 MIR7112-201ENST00000616126 65 ntBASIC3.52□□□□□ -1.85
HOXC11O43248 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms