Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 PTPN3-203ENST00000412145 8765 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
MSH5O43196 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
MSH5O43196 NRP1-205ENST00000374823 3737 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
MSH5O43196 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
MSH5O43196 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
MSH5O43196 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
MSH5O43196 RN7SKP151-201ENST00000410230 316 ntBASIC8.7□□□□□ -1.02
MSH5O43196 RN7SKP206-201ENST00000410823 293 ntBASIC8.7□□□□□ -1.02
MSH5O43196 RPL35AP21-201ENST00000437667 333 ntBASIC8.7□□□□□ -1.02
MSH5O43196 RPL23AP28-201ENST00000448062 470 ntBASIC8.7□□□□□ -1.02
MSH5O43196 PPP1R11P1-201ENST00000486095 376 ntBASIC8.7□□□□□ -1.02
MSH5O43196 AL132838.2-201ENST00000492041 314 ntBASIC8.7□□□□□ -1.02
MSH5O43196 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC8.7□□□□□ -1.02
MSH5O43196 AC140063.1-201ENST00000541343 259 ntBASIC8.7□□□□□ -1.02
MSH5O43196 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC8.7□□□□□ -1.02
MSH5O43196 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC8.7□□□□□ -1.02
MSH5O43196 AC124916.2-201ENST00000604416 224 ntBASIC8.7□□□□□ -1.02
MSH5O43196 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC8.7□□□□□ -1.02
MSH5O43196 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC8.7□□□□□ -1.02
MSH5O43196 ZNF462-201ENST00000277225 10414 ntAPPRIS P2 TSL 1 (best) BASIC8.7□□□□□ -1.02
MSH5O43196 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC8.7□□□□□ -1.02
MSH5O43196 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
MSH5O43196 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
MSH5O43196 IQCA1-202ENST00000309507 3155 ntAPPRIS ALT2 TSL 2 BASIC8.69□□□□□ -1.02
MSH5O43196 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC8.69□□□□□ -1.02
MSH5O43196 GPATCH2-202ENST00000366935 5851 ntAPPRIS P1 TSL 2 BASIC8.69□□□□□ -1.02
MSH5O43196 LINC02547-201ENST00000531559 3308 ntTSL 2 BASIC8.69□□□□□ -1.02
MSH5O43196 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
MSH5O43196 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
MSH5O43196 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
MSH5O43196 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
MSH5O43196 RBBP4-202ENST00000373493 7943 ntAPPRIS P3 TSL 1 (best) BASIC8.69□□□□□ -1.02
MSH5O43196 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC8.69□□□□□ -1.02
MSH5O43196 Y_RNA.245-201ENST00000364493 95 ntBASIC8.69□□□□□ -1.02
MSH5O43196 U3.52-201ENST00000384034 216 ntBASIC8.69□□□□□ -1.02
MSH5O43196 RN7SKP62-201ENST00000384539 329 ntBASIC8.69□□□□□ -1.02
MSH5O43196 MIR188-201ENST00000385034 86 ntBASIC8.69□□□□□ -1.02
MSH5O43196 MIR92A2-201ENST00000385299 75 ntBASIC8.69□□□□□ -1.02
MSH5O43196 AL663061.1-201ENST00000416625 580 ntBASIC8.69□□□□□ -1.02
MSH5O43196 AC078809.1-201ENST00000427601 140 ntBASIC8.69□□□□□ -1.02
MSH5O43196 AC231760.1-201ENST00000498002 260 ntBASIC8.69□□□□□ -1.02
MSH5O43196 RNU7-6P-201ENST00000516845 62 ntBASIC8.69□□□□□ -1.02
MSH5O43196 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC8.69□□□□□ -1.02
MSH5O43196 SNORA70D-201ENST00000578836 135 ntBASIC8.69□□□□□ -1.02
MSH5O43196 AC111186.1-201ENST00000604684 130 ntBASIC8.69□□□□□ -1.02
MSH5O43196 PCBP1-AS1-359ENST00000630283 1063 ntTSL 5 BASIC8.69□□□□□ -1.02
MSH5O43196 KIF20A-201ENST00000394894 3201 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
MSH5O43196 MAS1-201ENST00000252660 9841 ntAPPRIS P1 BASIC8.69□□□□□ -1.02
MSH5O43196 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC8.69□□□□□ -1.02
MSH5O43196 BTRC-204ENST00000408038 5982 ntAPPRIS ALT1 TSL 1 (best) BASIC8.69□□□□□ -1.02
MSH5O43196 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC8.69□□□□□ -1.02
MSH5O43196 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC8.69□□□□□ -1.02
MSH5O43196 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
MSH5O43196 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC8.69□□□□□ -1.02
MSH5O43196 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC8.69□□□□□ -1.02
MSH5O43196 DNAH10-210ENST00000638045 13678 ntAPPRIS P2 TSL 5 BASIC8.69□□□□□ -1.02
MSH5O43196 TRPM6-204ENST00000449912 8244 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
MSH5O43196 FTO-206ENST00000471389 11766 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
MSH5O43196 PAX8-AS1-202ENST00000422956 11799 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
MSH5O43196 ZMAT1-206ENST00000540921 3139 ntAPPRIS P1 TSL 2 BASIC8.68□□□□□ -1.02
MSH5O43196 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC8.68□□□□□ -1.02
MSH5O43196 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC8.68□□□□□ -1.02
MSH5O43196 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
MSH5O43196 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC8.68□□□□□ -1.02
MSH5O43196 AL117339.4-201ENST00000608335 7063 ntBASIC8.68□□□□□ -1.02
MSH5O43196 Y_RNA.486-201ENST00000384398 107 ntBASIC8.68□□□□□ -1.02
MSH5O43196 RNU6-733P-201ENST00000410759 104 ntBASIC8.68□□□□□ -1.02
MSH5O43196 RNA5SP31-201ENST00000411144 127 ntBASIC8.68□□□□□ -1.02
MSH5O43196 AC244670.1-201ENST00000436879 112 ntBASIC8.68□□□□□ -1.02
MSH5O43196 RPL23AP52-201ENST00000439311 478 ntBASIC8.68□□□□□ -1.02
MSH5O43196 AC007969.2-201ENST00000441891 191 ntBASIC8.68□□□□□ -1.02
MSH5O43196 AC103975.1-201ENST00000482506 483 ntBASIC8.68□□□□□ -1.02
MSH5O43196 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC8.68□□□□□ -1.02
MSH5O43196 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC8.68□□□□□ -1.02
MSH5O43196 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC8.68□□□□□ -1.02
MSH5O43196 Six3os1_1.1-201ENST00000620900 87 ntBASIC8.68□□□□□ -1.02
MSH5O43196 CPS1-201ENST00000233072 5821 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
MSH5O43196 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
MSH5O43196 CDH12-208ENST00000522262 3028 ntTSL 2 BASIC8.68□□□□□ -1.02
MSH5O43196 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
MSH5O43196 NBPF8-201ENST00000583271 5330 ntBASIC8.68□□□□□ -1.02
MSH5O43196 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC8.68□□□□□ -1.02
MSH5O43196 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC8.68□□□□□ -1.02
MSH5O43196 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC8.68□□□□□ -1.02
MSH5O43196 SOHLH2-202ENST00000379881 2193 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
MSH5O43196 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
MSH5O43196 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC8.67□□□□□ -1.02
MSH5O43196 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
MSH5O43196 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC8.67□□□□□ -1.02
MSH5O43196 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
MSH5O43196 RNU6-315P-201ENST00000362666 107 ntBASIC8.67□□□□□ -1.02
MSH5O43196 RNA5SP514-201ENST00000363717 111 ntBASIC8.67□□□□□ -1.02
MSH5O43196 ENTPD1-201ENST00000371205 2035 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
MSH5O43196 RNA5SP474-201ENST00000391234 90 ntBASIC8.67□□□□□ -1.02
MSH5O43196 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC8.67□□□□□ -1.02
MSH5O43196 AC091390.3-201ENST00000426478 338 ntBASIC8.67□□□□□ -1.02
MSH5O43196 AC083906.5-201ENST00000503722 328 ntBASIC8.67□□□□□ -1.02
MSH5O43196 AC018442.3-201ENST00000523025 183 ntBASIC8.67□□□□□ -1.02
MSH5O43196 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC8.67□□□□□ -1.02
MSH5O43196 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC8.67□□□□□ -1.02
Retrieved 100 of 98,524 protein–RNA pairs in 151.5 ms