Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CHMP3Q9Y3E7 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC5.62□□□□□ -1.51
CHMP3Q9Y3E7 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC5.62□□□□□ -1.51
CHMP3Q9Y3E7 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CHMP3Q9Y3E7 Y_RNA.126-201ENST00000363382 111 ntBASIC5.62□□□□□ -1.51
CHMP3Q9Y3E7 RNU6-263P-201ENST00000363811 107 ntBASIC5.62□□□□□ -1.51
CHMP3Q9Y3E7 AC068538.1-201ENST00000376856 336 ntBASIC5.62□□□□□ -1.51
CHMP3Q9Y3E7 RNU6-190P-201ENST00000384154 102 ntBASIC5.62□□□□□ -1.51
CHMP3Q9Y3E7 Y_RNA.489-201ENST00000384410 101 ntBASIC5.62□□□□□ -1.51
CHMP3Q9Y3E7 MIR1271-201ENST00000408537 86 ntBASIC5.62□□□□□ -1.51
CHMP3Q9Y3E7 RPS15AP10-201ENST00000432472 382 ntBASIC5.62□□□□□ -1.51
CHMP3Q9Y3E7 AL591473.1-201ENST00000464297 313 ntBASIC5.62□□□□□ -1.51
CHMP3Q9Y3E7 AC084198.1-201ENST00000477747 402 ntBASIC5.62□□□□□ -1.51
CHMP3Q9Y3E7 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC5.62□□□□□ -1.51
CHMP3Q9Y3E7 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC5.62□□□□□ -1.51
CHMP3Q9Y3E7 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC5.62□□□□□ -1.51
CHMP3Q9Y3E7 AC015912.2-201ENST00000571053 181 ntBASIC5.62□□□□□ -1.51
CHMP3Q9Y3E7 AC067852.3-201ENST00000589177 561 ntBASIC5.62□□□□□ -1.51
CHMP3Q9Y3E7 AC012119.1-201ENST00000603184 222 ntBASIC5.62□□□□□ -1.51
CHMP3Q9Y3E7 AL355297.3-201ENST00000604082 446 ntBASIC5.62□□□□□ -1.51
CHMP3Q9Y3E7 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CHMP3Q9Y3E7 AC002044.1-201ENST00000606707 158 ntBASIC5.62□□□□□ -1.51
CHMP3Q9Y3E7 AC007998.5-201ENST00000622938 237 ntBASIC5.62□□□□□ -1.51
CHMP3Q9Y3E7 AC243312.2-201ENST00000623340 601 ntBASIC5.62□□□□□ -1.51
CHMP3Q9Y3E7 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CHMP3Q9Y3E7 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
CHMP3Q9Y3E7 AC104260.2-201ENST00000623551 3497 ntBASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 RNU6-874P-201ENST00000362390 105 ntBASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 Y_RNA.151-201ENST00000363566 112 ntBASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 RNU4-70P-201ENST00000384579 139 ntBASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 MIR548I3-201ENST00000408378 149 ntBASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 MIR548I1-201ENST00000408810 149 ntBASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 AC007529.1-201ENST00000418574 2178 ntBASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 AC099677.1-201ENST00000420575 175 ntBASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 LAMTOR3P1-201ENST00000428620 370 ntBASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 RPS20P1-201ENST00000434853 354 ntBASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 RPL12P46-201ENST00000436610 195 ntBASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 NEFMP1-201ENST00000443423 1006 ntBASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 MRPL48P1-201ENST00000445390 636 ntBASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 FTH1P25-201ENST00000447665 469 ntBASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 CHEK2P4-201ENST00000450340 246 ntBASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 RPL9P32-201ENST00000464118 620 ntBASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 RPL37P6-202ENST00000464216 403 ntBASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 RPL21P103-201ENST00000479921 488 ntBASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 AC020890.1-201ENST00000491837 504 ntBASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 RNU6-475P-201ENST00000516073 104 ntBASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 AC027287.1-201ENST00000553115 1453 ntBASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 PARP1P2-201ENST00000556806 195 ntBASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 AC116667.1-201ENST00000604855 2072 ntBASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 ARF4P1-201ENST00000605447 541 ntBASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 HMGB1P50-201ENST00000605814 607 ntBASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 AL021879.1-201ENST00000611756 288 ntBASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 MIR8062-201ENST00000621515 85 ntBASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
CHMP3Q9Y3E7 AL137003.2-201ENST00000606924 2538 ntBASIC5.6□□□□□ -1.51
CHMP3Q9Y3E7 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
CHMP3Q9Y3E7 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
CHMP3Q9Y3E7 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
CHMP3Q9Y3E7 ZNF72P-201ENST00000425869 1908 ntBASIC5.6□□□□□ -1.51
CHMP3Q9Y3E7 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC5.6□□□□□ -1.51
CHMP3Q9Y3E7 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC5.6□□□□□ -1.51
CHMP3Q9Y3E7 Y_RNA.424-201ENST00000384063 103 ntBASIC5.6□□□□□ -1.51
CHMP3Q9Y3E7 RNU6-214P-201ENST00000384130 107 ntBASIC5.6□□□□□ -1.51
CHMP3Q9Y3E7 RNU6-14P-201ENST00000384630 106 ntBASIC5.6□□□□□ -1.51
CHMP3Q9Y3E7 SDHCP2-201ENST00000398565 501 ntBASIC5.6□□□□□ -1.51
CHMP3Q9Y3E7 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC5.6□□□□□ -1.51
CHMP3Q9Y3E7 HMGB1P9-201ENST00000429856 646 ntBASIC5.6□□□□□ -1.51
CHMP3Q9Y3E7 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC5.6□□□□□ -1.51
CHMP3Q9Y3E7 RPL23AP33-201ENST00000442301 452 ntBASIC5.6□□□□□ -1.51
CHMP3Q9Y3E7 PHBP16-201ENST00000446318 950 ntBASIC5.6□□□□□ -1.51
CHMP3Q9Y3E7 AC010683.1-201ENST00000473673 378 ntBASIC5.6□□□□□ -1.51
CHMP3Q9Y3E7 CREM-230ENST00000474931 626 ntTSL 2 BASIC5.6□□□□□ -1.51
CHMP3Q9Y3E7 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC5.6□□□□□ -1.51
CHMP3Q9Y3E7 RNY3P15-201ENST00000516297 97 ntBASIC5.6□□□□□ -1.51
CHMP3Q9Y3E7 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC5.6□□□□□ -1.51
CHMP3Q9Y3E7 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC5.6□□□□□ -1.51
CHMP3Q9Y3E7 AC023157.2-201ENST00000540596 141 ntBASIC5.6□□□□□ -1.51
CHMP3Q9Y3E7 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CHMP3Q9Y3E7 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC5.6□□□□□ -1.51
CHMP3Q9Y3E7 AC006254.3-201ENST00000603353 884 ntBASIC5.6□□□□□ -1.51
CHMP3Q9Y3E7 ELOCP5-201ENST00000604924 333 ntBASIC5.6□□□□□ -1.51
CHMP3Q9Y3E7 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
CHMP3Q9Y3E7 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
CHMP3Q9Y3E7 AC006971.1-201ENST00000407916 4486 ntBASIC5.6□□□□□ -1.51
CHMP3Q9Y3E7 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CHMP3Q9Y3E7 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
CHMP3Q9Y3E7 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC5.59□□□□□ -1.51
CHMP3Q9Y3E7 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
CHMP3Q9Y3E7 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CHMP3Q9Y3E7 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms