Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 AC018628.1-201ENST00000624147 3819 ntBASIC9.46□□□□□ -0.9
SENP3Q9H4L4 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
SENP3Q9H4L4 ENSA-201ENST00000271690 2818 ntAPPRIS ALT1 TSL 1 (best) BASIC9.46□□□□□ -0.9
SENP3Q9H4L4 MAPK10-357ENST00000641831 2858 ntBASIC9.45□□□□□ -0.9
SENP3Q9H4L4 NCKAP5-204ENST00000409213 2390 ntAPPRIS ALT2 TSL 5 BASIC9.45□□□□□ -0.9
SENP3Q9H4L4 SPOCK1-201ENST00000282223 4488 ntTSL 5 BASIC9.45□□□□□ -0.9
SENP3Q9H4L4 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
SENP3Q9H4L4 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC9.45□□□□□ -0.9
SENP3Q9H4L4 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC9.45□□□□□ -0.9
SENP3Q9H4L4 ZNF407-202ENST00000309902 5595 ntTSL 2 BASIC9.45□□□□□ -0.9
SENP3Q9H4L4 DCAF13-210ENST00000618975 2038 ntTSL 2 BASIC9.45□□□□□ -0.9
SENP3Q9H4L4 RNU6-622P-201ENST00000384272 103 ntBASIC9.45□□□□□ -0.9
SENP3Q9H4L4 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC9.45□□□□□ -0.9
SENP3Q9H4L4 AC245088.1-201ENST00000486508 384 ntTSL 3 BASIC9.45□□□□□ -0.9
SENP3Q9H4L4 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC9.45□□□□□ -0.9
SENP3Q9H4L4 N4BP2-201ENST00000261435 9744 ntAPPRIS P1 TSL 5 BASIC9.45□□□□□ -0.9
SENP3Q9H4L4 ARHGAP21-201ENST00000320481 4343 ntTSL 5 BASIC9.45□□□□□ -0.9
SENP3Q9H4L4 ZFP62-201ENST00000502412 3415 ntAPPRIS P1 TSL 2 BASIC9.45□□□□□ -0.9
SENP3Q9H4L4 ZNF718-201ENST00000510175 3495 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
SENP3Q9H4L4 AL133412.1-201ENST00000380194 2992 ntBASIC9.45□□□□□ -0.9
SENP3Q9H4L4 KLHL7-203ENST00000409689 3231 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
SENP3Q9H4L4 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
SENP3Q9H4L4 ARMCX3-207ENST00000537169 3318 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
SENP3Q9H4L4 ZNF841-202ENST00000426391 3620 ntTSL 2 BASIC9.44□□□□□ -0.9
SENP3Q9H4L4 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC9.44□□□□□ -0.9
SENP3Q9H4L4 KCNMB2-204ENST00000432997 2552 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
SENP3Q9H4L4 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC9.44□□□□□ -0.9
SENP3Q9H4L4 NAT10-205ENST00000531159 3436 ntAPPRIS ALT2 TSL 2 BASIC9.44□□□□□ -0.9
SENP3Q9H4L4 ZNF3-203ENST00000303915 3473 ntAPPRIS P1 TSL 5 BASIC9.44□□□□□ -0.9
SENP3Q9H4L4 HEPH-203ENST00000419594 3694 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
SENP3Q9H4L4 RNU6-1094P-201ENST00000362416 104 ntBASIC9.44□□□□□ -0.9
SENP3Q9H4L4 SNORA40.18-201ENST00000391200 128 ntBASIC9.44□□□□□ -0.9
SENP3Q9H4L4 RNU7-70P-201ENST00000516941 66 ntBASIC9.44□□□□□ -0.9
SENP3Q9H4L4 AC068657.1-201ENST00000520807 306 ntBASIC9.44□□□□□ -0.9
SENP3Q9H4L4 AC027419.1-201ENST00000522976 328 ntBASIC9.44□□□□□ -0.9
SENP3Q9H4L4 AC004486.1-201ENST00000546846 233 ntBASIC9.44□□□□□ -0.9
SENP3Q9H4L4 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC9.44□□□□□ -0.9
SENP3Q9H4L4 AC002543.1-201ENST00000299783 1954 ntBASIC9.44□□□□□ -0.9
SENP3Q9H4L4 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC9.44□□□□□ -0.9
SENP3Q9H4L4 FAM111B-201ENST00000343597 3488 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
SENP3Q9H4L4 MUC21-201ENST00000376296 3651 ntAPPRIS P2 TSL 1 (best) BASIC9.44□□□□□ -0.9
SENP3Q9H4L4 PRRG1-201ENST00000378628 4493 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
SENP3Q9H4L4 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
SENP3Q9H4L4 CTNND1-233ENST00000532787 5751 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
SENP3Q9H4L4 NFX1-203ENST00000379540 4604 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
SENP3Q9H4L4 ACOT13-201ENST00000230048 4047 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
SENP3Q9H4L4 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC9.43□□□□□ -0.9
SENP3Q9H4L4 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC9.43□□□□□ -0.9
SENP3Q9H4L4 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
SENP3Q9H4L4 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC9.43□□□□□ -0.9
SENP3Q9H4L4 AC118273.1-201ENST00000525324 3006 ntBASIC9.43□□□□□ -0.9
SENP3Q9H4L4 AC116366.3-205ENST00000640655 8032 ntAPPRIS ALT2 TSL 5 BASIC9.43□□□□□ -0.9
SENP3Q9H4L4 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
SENP3Q9H4L4 ORC3-206ENST00000546266 2470 ntTSL 2 BASIC9.43□□□□□ -0.9
SENP3Q9H4L4 DMTF1-213ENST00000432937 2411 ntTSL 2 BASIC9.43□□□□□ -0.9
SENP3Q9H4L4 NRCAM-201ENST00000351718 6228 ntAPPRIS P3 TSL 1 (best) BASIC9.43□□□□□ -0.9
SENP3Q9H4L4 DICER1-201ENST00000343455 10277 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
SENP3Q9H4L4 TCF12-207ENST00000557843 4076 ntAPPRIS ALT1 TSL 1 (best) BASIC9.43□□□□□ -0.9
SENP3Q9H4L4 VTRNA3-1P-201ENST00000362552 102 ntBASIC9.43□□□□□ -0.9
SENP3Q9H4L4 RNU2-59P-201ENST00000410482 191 ntBASIC9.43□□□□□ -0.9
SENP3Q9H4L4 AC063976.3-201ENST00000426849 329 ntBASIC9.43□□□□□ -0.9
SENP3Q9H4L4 LMCD1-AS1-202ENST00000439407 576 ntTSL 4 BASIC9.43□□□□□ -0.9
SENP3Q9H4L4 AC108738.1-201ENST00000603703 237 ntBASIC9.43□□□□□ -0.9
SENP3Q9H4L4 CASR-205ENST00000639785 10047 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
SENP3Q9H4L4 CORIN-202ENST00000502252 3112 ntAPPRIS ALT2 TSL 2 BASIC9.43□□□□□ -0.9
SENP3Q9H4L4 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC9.43□□□□□ -0.9
SENP3Q9H4L4 BTN3A3-201ENST00000244519 3002 ntAPPRIS P4 TSL 1 (best) BASIC9.43□□□□□ -0.9
SENP3Q9H4L4 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC9.43□□□□□ -0.9
SENP3Q9H4L4 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
SENP3Q9H4L4 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
SENP3Q9H4L4 AC096582.3-201ENST00000636578 3716 ntAPPRIS P1 TSL 5 BASIC9.43□□□□□ -0.9
SENP3Q9H4L4 JAM3-202ENST00000441717 3363 ntTSL 2 BASIC9.43□□□□□ -0.9
SENP3Q9H4L4 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC9.42□□□□□ -0.9
SENP3Q9H4L4 ZNF14-201ENST00000344099 2949 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
SENP3Q9H4L4 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC9.42□□□□□ -0.9
SENP3Q9H4L4 SSR1-201ENST00000244763 9669 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
SENP3Q9H4L4 NOX1-202ENST00000372960 2418 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
SENP3Q9H4L4 LINC00861-201ENST00000500989 5330 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
SENP3Q9H4L4 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC9.42□□□□□ -0.9
SENP3Q9H4L4 PRPS1-202ENST00000372419 628 ntTSL 2 BASIC9.42□□□□□ -0.9
SENP3Q9H4L4 RNU6-679P-201ENST00000391003 106 ntBASIC9.42□□□□□ -0.9
SENP3Q9H4L4 SNORA7.5-201ENST00000410672 110 ntBASIC9.42□□□□□ -0.9
SENP3Q9H4L4 AP002453.1-201ENST00000492327 668 ntBASIC9.42□□□□□ -0.9
SENP3Q9H4L4 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC9.42□□□□□ -0.9
SENP3Q9H4L4 AL513534.2-201ENST00000603836 250 ntBASIC9.42□□□□□ -0.9
SENP3Q9H4L4 KAT6B-205ENST00000372725 6944 ntAPPRIS ALT2 TSL 5 BASIC9.42□□□□□ -0.9
SENP3Q9H4L4 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC9.42□□□□□ -0.9
SENP3Q9H4L4 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC9.42□□□□□ -0.9
SENP3Q9H4L4 GRIK2-206ENST00000413795 4876 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
SENP3Q9H4L4 NUP43-201ENST00000340413 3874 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
SENP3Q9H4L4 ZNF271P-201ENST00000399070 5124 ntTSL 2 BASIC9.42□□□□□ -0.9
SENP3Q9H4L4 PPFIA2-220ENST00000550584 5405 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
SENP3Q9H4L4 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC9.41□□□□□ -0.9
SENP3Q9H4L4 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC9.41□□□□□ -0.9
SENP3Q9H4L4 MPP7-201ENST00000337532 5080 ntAPPRIS P1 TSL 5 BASIC9.41□□□□□ -0.9
SENP3Q9H4L4 AC005839.1-201ENST00000624148 3213 ntBASIC9.41□□□□□ -0.9
SENP3Q9H4L4 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC9.41□□□□□ -0.9
SENP3Q9H4L4 TRIM6-202ENST00000380097 3403 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
SENP3Q9H4L4 KDELC2-202ENST00000434945 4374 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
SENP3Q9H4L4 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC9.41□□□□□ -0.9
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms