Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 U8.1-201ENST00000362843 134 ntBASIC1.52□□□□□ -2.17
SCN3AQ9NY46 RNU6-374P-201ENST00000364146 108 ntBASIC1.52□□□□□ -2.17
SCN3AQ9NY46 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC1.52□□□□□ -2.17
SCN3AQ9NY46 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC1.52□□□□□ -2.17
SCN3AQ9NY46 AL358075.3-201ENST00000426289 226 ntBASIC1.52□□□□□ -2.17
SCN3AQ9NY46 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC1.52□□□□□ -2.17
SCN3AQ9NY46 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC1.52□□□□□ -2.17
SCN3AQ9NY46 GTF2IP12-201ENST00000456547 356 ntBASIC1.52□□□□□ -2.17
SCN3AQ9NY46 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC1.52□□□□□ -2.17
SCN3AQ9NY46 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC1.52□□□□□ -2.17
SCN3AQ9NY46 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC1.52□□□□□ -2.17
SCN3AQ9NY46 AC117532.1-201ENST00000514638 323 ntBASIC1.52□□□□□ -2.17
SCN3AQ9NY46 SCARNA3-201ENST00000517097 143 ntBASIC1.52□□□□□ -2.17
SCN3AQ9NY46 OR4R1P-201ENST00000529879 463 ntBASIC1.52□□□□□ -2.17
SCN3AQ9NY46 OR4P1P-201ENST00000530808 1136 ntBASIC1.52□□□□□ -2.17
SCN3AQ9NY46 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC1.52□□□□□ -2.17
SCN3AQ9NY46 AC007375.1-201ENST00000554513 578 ntBASIC1.52□□□□□ -2.17
SCN3AQ9NY46 ANP32BP3-201ENST00000559213 706 ntBASIC1.52□□□□□ -2.17
SCN3AQ9NY46 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC1.52□□□□□ -2.17
SCN3AQ9NY46 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC1.52□□□□□ -2.17
SCN3AQ9NY46 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC1.52□□□□□ -2.17
SCN3AQ9NY46 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.52□□□□□ -2.17
SCN3AQ9NY46 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC1.52□□□□□ -2.17
SCN3AQ9NY46 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC1.52□□□□□ -2.17
SCN3AQ9NY46 AC012493.3-201ENST00000604494 112 ntBASIC1.52□□□□□ -2.17
SCN3AQ9NY46 AC006213.4-201ENST00000616184 634 ntBASIC1.52□□□□□ -2.17
SCN3AQ9NY46 AC108479.2-201ENST00000617314 601 ntBASIC1.52□□□□□ -2.17
SCN3AQ9NY46 CR848007.1-201ENST00000442354 1699 ntBASIC1.51□□□□□ -2.17
SCN3AQ9NY46 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.51□□□□□ -2.17
SCN3AQ9NY46 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC1.51□□□□□ -2.17
SCN3AQ9NY46 MTND4P27-201ENST00000450813 1354 ntBASIC1.51□□□□□ -2.17
SCN3AQ9NY46 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
SCN3AQ9NY46 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC1.51□□□□□ -2.17
SCN3AQ9NY46 MIR378A-201ENST00000362177 66 ntBASIC1.51□□□□□ -2.17
SCN3AQ9NY46 RNU4-13P-201ENST00000364019 141 ntBASIC1.51□□□□□ -2.17
SCN3AQ9NY46 AC244453.4-201ENST00000419150 388 ntBASIC1.51□□□□□ -2.17
SCN3AQ9NY46 RPL31P60-201ENST00000478450 367 ntBASIC1.51□□□□□ -2.17
SCN3AQ9NY46 AC048346.1-201ENST00000510247 144 ntBASIC1.51□□□□□ -2.17
SCN3AQ9NY46 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC1.51□□□□□ -2.17
SCN3AQ9NY46 RNU6-551P-201ENST00000516661 103 ntBASIC1.51□□□□□ -2.17
SCN3AQ9NY46 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC1.51□□□□□ -2.17
SCN3AQ9NY46 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC1.51□□□□□ -2.17
SCN3AQ9NY46 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.51□□□□□ -2.17
SCN3AQ9NY46 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC1.51□□□□□ -2.17
SCN3AQ9NY46 MIR5571-201ENST00000577998 113 ntBASIC1.51□□□□□ -2.17
SCN3AQ9NY46 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC1.51□□□□□ -2.17
SCN3AQ9NY46 AP000942.3-201ENST00000603702 160 ntBASIC1.51□□□□□ -2.17
SCN3AQ9NY46 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.51□□□□□ -2.17
SCN3AQ9NY46 AC116618.1-201ENST00000634617 774 ntBASIC1.51□□□□□ -2.17
SCN3AQ9NY46 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.51□□□□□ -2.17
SCN3AQ9NY46 AC009902.3-201ENST00000606235 2172 ntBASIC1.51□□□□□ -2.17
SCN3AQ9NY46 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC1.5□□□□□ -2.17
SCN3AQ9NY46 RNU6-543P-201ENST00000362576 108 ntBASIC1.5□□□□□ -2.17
SCN3AQ9NY46 MIR524-201ENST00000385242 87 ntBASIC1.5□□□□□ -2.17
SCN3AQ9NY46 XKRYP1-201ENST00000423438 492 ntBASIC1.5□□□□□ -2.17
SCN3AQ9NY46 OR4K11P-201ENST00000431829 904 ntBASIC1.5□□□□□ -2.17
SCN3AQ9NY46 XKRYP2-201ENST00000432915 492 ntBASIC1.5□□□□□ -2.17
SCN3AQ9NY46 CDC42P1-201ENST00000456658 548 ntBASIC1.5□□□□□ -2.17
SCN3AQ9NY46 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC1.5□□□□□ -2.17
SCN3AQ9NY46 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC1.5□□□□□ -2.17
SCN3AQ9NY46 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
SCN3AQ9NY46 MIR514B-201ENST00000516774 80 ntBASIC1.5□□□□□ -2.17
SCN3AQ9NY46 AC124293.1-201ENST00000530034 493 ntBASIC1.5□□□□□ -2.17
SCN3AQ9NY46 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC1.5□□□□□ -2.17
SCN3AQ9NY46 AC139103.1-201ENST00000534696 1030 ntBASIC1.5□□□□□ -2.17
SCN3AQ9NY46 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC1.5□□□□□ -2.17
SCN3AQ9NY46 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC1.5□□□□□ -2.17
SCN3AQ9NY46 AC009812.4-201ENST00000569134 1805 ntBASIC1.5□□□□□ -2.17
SCN3AQ9NY46 AL139276.1-201ENST00000311910 1001 ntBASIC1.5□□□□□ -2.17
SCN3AQ9NY46 SNORA68.1-201ENST00000364537 132 ntBASIC1.5□□□□□ -2.17
SCN3AQ9NY46 RNU6-14P-201ENST00000384630 106 ntBASIC1.5□□□□□ -2.17
SCN3AQ9NY46 MOB4-205ENST00000409916 829 ntTSL 3 BASIC1.5□□□□□ -2.17
SCN3AQ9NY46 AL353729.1-201ENST00000425044 720 ntBASIC1.5□□□□□ -2.17
SCN3AQ9NY46 BMI1P1-201ENST00000445879 941 ntBASIC1.5□□□□□ -2.17
SCN3AQ9NY46 RPS15AP27-201ENST00000449183 343 ntBASIC1.5□□□□□ -2.17
SCN3AQ9NY46 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC1.5□□□□□ -2.17
SCN3AQ9NY46 USP9YP10-201ENST00000454868 628 ntBASIC1.5□□□□□ -2.17
SCN3AQ9NY46 SNRPFP4-201ENST00000456366 242 ntBASIC1.5□□□□□ -2.17
SCN3AQ9NY46 NUP58P1-201ENST00000502546 1738 ntBASIC1.5□□□□□ -2.17
SCN3AQ9NY46 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC1.5□□□□□ -2.17
SCN3AQ9NY46 DNAJC19P9-201ENST00000555084 351 ntBASIC1.5□□□□□ -2.17
SCN3AQ9NY46 AC090897.2-201ENST00000581715 130 ntBASIC1.5□□□□□ -2.17
SCN3AQ9NY46 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC1.5□□□□□ -2.17
SCN3AQ9NY46 BNIP3P24-201ENST00000593398 557 ntBASIC1.5□□□□□ -2.17
SCN3AQ9NY46 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC1.5□□□□□ -2.17
SCN3AQ9NY46 uc_338.5-201ENST00000611839 155 ntBASIC1.5□□□□□ -2.17
SCN3AQ9NY46 AC079395.3-201ENST00000615161 484 ntBASIC1.5□□□□□ -2.17
SCN3AQ9NY46 AL356585.4-201ENST00000623078 1229 ntBASIC1.5□□□□□ -2.17
SCN3AQ9NY46 VPS8-228ENST00000628962 207 ntTSL 5 BASIC1.5□□□□□ -2.17
SCN3AQ9NY46 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC1.5□□□□□ -2.17
SCN3AQ9NY46 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC1.49□□□□□ -2.17
SCN3AQ9NY46 RNU5D-1-201ENST00000363299 116 ntBASIC1.49□□□□□ -2.17
SCN3AQ9NY46 RNU6-619P-201ENST00000365146 108 ntBASIC1.49□□□□□ -2.17
SCN3AQ9NY46 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
SCN3AQ9NY46 RNU6-997P-201ENST00000384725 107 ntBASIC1.49□□□□□ -2.17
SCN3AQ9NY46 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
SCN3AQ9NY46 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC1.49□□□□□ -2.17
SCN3AQ9NY46 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC1.49□□□□□ -2.17
SCN3AQ9NY46 AC099548.1-201ENST00000421443 426 ntBASIC1.49□□□□□ -2.17
SCN3AQ9NY46 OR10R1P-201ENST00000441524 1141 ntBASIC1.49□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms