Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 ASNSP3-201ENST00000451989 1306 ntBASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 AC073343.1-201ENST00000328239 651 ntBASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 RNU1-83P-201ENST00000363426 164 ntBASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 RNU6-606P-201ENST00000384721 111 ntBASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 RNU6-331P-201ENST00000384724 107 ntBASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 MIR568-201ENST00000385036 95 ntBASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 MIR1290-201ENST00000408735 78 ntBASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 RNU2-36P-201ENST00000410361 191 ntBASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 RNU2-39P-201ENST00000410604 198 ntBASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 PMCHL1-202ENST00000423102 261 ntBASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 RPL27AP8-201ENST00000424277 446 ntBASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 OR2AS1P-201ENST00000427827 319 ntBASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 RPS29P17-201ENST00000430795 166 ntBASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 AC079781.2-201ENST00000446424 169 ntBASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 AC012671.1-201ENST00000451912 203 ntBASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 MTND5P22-201ENST00000458380 195 ntBASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 AC007547.1-201ENST00000462177 490 ntBASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 RN7SL303P-201ENST00000469773 251 ntBASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 AC010618.1-201ENST00000469924 477 ntBASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 AL592156.1-201ENST00000508758 304 ntBASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 RNU6-559P-201ENST00000516151 98 ntBASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 RNU6-410P-201ENST00000517006 107 ntBASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 SUMO2P20-201ENST00000520803 283 ntBASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 COPS8P3-201ENST00000526024 482 ntBASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 OR4R1P-201ENST00000529879 463 ntBASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 OR5BN1P-201ENST00000532955 829 ntBASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 MIR3939-201ENST00000582614 106 ntBASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 AC098848.2-201ENST00000588023 330 ntBASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 IPO5P1-202ENST00000600039 287 ntBASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 AL590392.1-201ENST00000604960 446 ntBASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 AC080078.3-201ENST00000605407 463 ntBASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 ARF4P1-201ENST00000605447 541 ntBASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
CLIP3Q96DZ5 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 SNORD74.4-201ENST00000364129 80 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 Y_RNA.301-201ENST00000364990 103 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 RNU5E-6P-201ENST00000365574 115 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 DEFB109C-201ENST00000382575 264 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 DEFB109B-201ENST00000382656 264 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 RNU6-639P-201ENST00000384074 107 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 Y_RNA.445-201ENST00000384168 102 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 RNU6-39P-201ENST00000384344 107 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 CD3D-202ENST00000392884 476 ntTSL 2 BASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 AL583835.1-201ENST00000399570 407 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 AL592114.1-201ENST00000403842 483 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 Y_RNA.605-201ENST00000410577 105 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 MTCO2P27-201ENST00000420740 428 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 PDSS1P1-201ENST00000422953 1114 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 RAC1P6-201ENST00000423911 575 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 RSL24D1P6-201ENST00000426934 401 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 ERLEC1P1-201ENST00000433806 578 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 TXNP1-201ENST00000441872 371 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 DDX3P2-201ENST00000446138 111 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 GMFBP1-201ENST00000467831 427 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 AC012181.1-201ENST00000479895 423 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 RPS4XP13-201ENST00000483219 789 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 RPS27AP13-201ENST00000498403 237 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 HSPD1P15-201ENST00000505573 1122 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 AC105417.1-201ENST00000514691 285 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 Y_RNA.665-201ENST00000516177 98 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 MTND6P33-201ENST00000571794 183 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 AC136624.4-201ENST00000573044 370 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 MIR4644-201ENST00000579929 84 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 AC100830.2-201ENST00000581636 240 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 MIR4503-201ENST00000582187 83 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 AL670379.6-201ENST00000603753 252 ntBASIC4.26□□□□□ -1.73
CLIP3Q96DZ5 AL670379.11-201ENST00000604059 253 ntBASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms