Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AC022795.1-201ENST00000473808 480 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC3.97□□□□□ -1.77
COL4A3Q01955 RPL31P61-201ENST00000496160 376 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 COX7A2P2-201ENST00000505291 250 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 RNA5SP208-201ENST00000516156 78 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 RNU4ATAC10P-201ENST00000516967 122 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 RNA5SP503-201ENST00000517047 117 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 COPS8P3-201ENST00000526024 482 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 DEFB109D-201ENST00000529497 240 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 STX3-204ENST00000530221 534 ntTSL 5 BASIC3.97□□□□□ -1.77
COL4A3Q01955 AP000857.1-201ENST00000532151 543 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 AC004817.2-201ENST00000561794 651 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 SULT1C2P2-201ENST00000562517 294 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC3.97□□□□□ -1.77
COL4A3Q01955 MIR4703-201ENST00000577728 79 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 COX6CP3-201ENST00000580869 223 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 AP000654.2-201ENST00000605633 586 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 AL590099.1-201ENST00000615276 138 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 AL122125.1-201ENST00000616999 600 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 uc_338.34-201ENST00000617467 174 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 RNU6-156P-201ENST00000621869 107 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.97□□□□□ -1.77
COL4A3Q01955 PROS2P-201ENST00000474651 1951 ntBASIC3.97□□□□□ -1.77
COL4A3Q01955 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
COL4A3Q01955 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
COL4A3Q01955 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
COL4A3Q01955 AC068254.2-201ENST00000623938 3577 ntBASIC3.96□□□□□ -1.77
COL4A3Q01955 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
COL4A3Q01955 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC3.96□□□□□ -1.78
COL4A3Q01955 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC3.96□□□□□ -1.78
COL4A3Q01955 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC3.96□□□□□ -1.78
COL4A3Q01955 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
COL4A3Q01955 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
COL4A3Q01955 SNORD82-201ENST00000365530 70 ntBASIC3.96□□□□□ -1.78
COL4A3Q01955 U3.26-201ENST00000391236 204 ntBASIC3.96□□□□□ -1.78
COL4A3Q01955 AL031121.1-201ENST00000406553 254 ntBASIC3.96□□□□□ -1.78
COL4A3Q01955 RNU6-370P-201ENST00000411008 104 ntBASIC3.96□□□□□ -1.78
COL4A3Q01955 TXNP1-201ENST00000441872 371 ntBASIC3.96□□□□□ -1.78
COL4A3Q01955 RANP8-201ENST00000444720 713 ntBASIC3.96□□□□□ -1.78
COL4A3Q01955 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.96□□□□□ -1.78
COL4A3Q01955 RNU7-66P-201ENST00000459469 62 ntBASIC3.96□□□□□ -1.78
COL4A3Q01955 RNU6-1137P-201ENST00000517073 99 ntBASIC3.96□□□□□ -1.78
COL4A3Q01955 AC022634.1-201ENST00000520765 532 ntBASIC3.96□□□□□ -1.78
COL4A3Q01955 AP000889.2-201ENST00000532684 490 ntBASIC3.96□□□□□ -1.78
COL4A3Q01955 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.96□□□□□ -1.78
COL4A3Q01955 MIR3672-201ENST00000584290 82 ntBASIC3.96□□□□□ -1.78
COL4A3Q01955 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC3.96□□□□□ -1.78
COL4A3Q01955 RMST_9.1-201ENST00000619945 193 ntBASIC3.96□□□□□ -1.78
COL4A3Q01955 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
COL4A3Q01955 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
COL4A3Q01955 USP44-208ENST00000552440 1818 ntTSL 5 BASIC3.96□□□□□ -1.78
COL4A3Q01955 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.96□□□□□ -1.78
COL4A3Q01955 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.78
COL4A3Q01955 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
COL4A3Q01955 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
COL4A3Q01955 MAPK10-320ENST00000641462 6696 ntBASIC3.95□□□□□ -1.78
COL4A3Q01955 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
COL4A3Q01955 MAPK10-303ENST00000641324 3959 ntBASIC3.95□□□□□ -1.78
COL4A3Q01955 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC3.95□□□□□ -1.78
COL4A3Q01955 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC3.95□□□□□ -1.78
COL4A3Q01955 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL4A3Q01955 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
COL4A3Q01955 RNU6-1188P-201ENST00000363795 107 ntBASIC3.95□□□□□ -1.78
COL4A3Q01955 RNU6-82P-201ENST00000363970 107 ntBASIC3.95□□□□□ -1.78
COL4A3Q01955 Y_RNA.510-201ENST00000384511 114 ntBASIC3.95□□□□□ -1.78
COL4A3Q01955 MIR128-1-201ENST00000384921 82 ntBASIC3.95□□□□□ -1.78
COL4A3Q01955 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
COL4A3Q01955 AL139095.1-201ENST00000404326 391 ntBASIC3.95□□□□□ -1.78
COL4A3Q01955 AC114491.1-201ENST00000416095 246 ntBASIC3.95□□□□□ -1.78
COL4A3Q01955 AL035423.1-201ENST00000420331 213 ntBASIC3.95□□□□□ -1.78
COL4A3Q01955 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC3.95□□□□□ -1.78
COL4A3Q01955 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC3.95□□□□□ -1.78
COL4A3Q01955 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.95□□□□□ -1.78
COL4A3Q01955 HMGB3P11-201ENST00000440127 604 ntBASIC3.95□□□□□ -1.78
COL4A3Q01955 AC106872.2-201ENST00000494303 480 ntBASIC3.95□□□□□ -1.78
COL4A3Q01955 Y_RNA.654-201ENST00000497848 106 ntBASIC3.95□□□□□ -1.78
COL4A3Q01955 TRBVA-201ENST00000498804 316 ntBASIC3.95□□□□□ -1.78
COL4A3Q01955 SNORA70.18-201ENST00000516696 98 ntBASIC3.95□□□□□ -1.78
COL4A3Q01955 MYL12AP1-201ENST00000518490 515 ntBASIC3.95□□□□□ -1.78
COL4A3Q01955 FAM60DP-201ENST00000524174 632 ntBASIC3.95□□□□□ -1.78
COL4A3Q01955 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
COL4A3Q01955 AP000763.2-201ENST00000540641 163 ntBASIC3.95□□□□□ -1.78
COL4A3Q01955 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC3.95□□□□□ -1.78
COL4A3Q01955 MDM2-233ENST00000545204 398 ntTSL 5 BASIC3.95□□□□□ -1.78
COL4A3Q01955 AC092470.1-201ENST00000546187 132 ntBASIC3.95□□□□□ -1.78
COL4A3Q01955 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC3.95□□□□□ -1.78
COL4A3Q01955 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC3.95□□□□□ -1.78
COL4A3Q01955 AL118558.2-201ENST00000556294 238 ntBASIC3.95□□□□□ -1.78
COL4A3Q01955 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC3.95□□□□□ -1.78
COL4A3Q01955 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC3.95□□□□□ -1.78
COL4A3Q01955 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.95□□□□□ -1.78
COL4A3Q01955 AC123768.4-201ENST00000616244 701 ntBASIC3.95□□□□□ -1.78
COL4A3Q01955 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.95□□□□□ -1.78
COL4A3Q01955 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
COL4A3Q01955 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL4A3Q01955 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.95□□□□□ -1.78
COL4A3Q01955 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL4A3Q01955 FTX-210ENST00000603037 8347 ntTSL 5 BASIC3.95□□□□□ -1.78
COL4A3Q01955 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL4A3Q01955 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms