Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC100870.1-201ENST00000522035 505 ntBASIC4.11□□□□□ -1.75
MSX2P35548 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC4.11□□□□□ -1.75
MSX2P35548 AP003385.6-201ENST00000531603 374 ntBASIC4.11□□□□□ -1.75
MSX2P35548 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC4.11□□□□□ -1.75
MSX2P35548 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC4.11□□□□□ -1.75
MSX2P35548 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC4.11□□□□□ -1.75
MSX2P35548 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC4.11□□□□□ -1.75
MSX2P35548 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC4.11□□□□□ -1.75
MSX2P35548 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
MSX2P35548 MIR4480-201ENST00000582492 71 ntBASIC4.11□□□□□ -1.75
MSX2P35548 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.11□□□□□ -1.75
MSX2P35548 AL669831.4-202ENST00000590817 238 ntBASIC4.11□□□□□ -1.75
MSX2P35548 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC4.11□□□□□ -1.75
MSX2P35548 AC006329.2-201ENST00000611491 394 ntBASIC4.11□□□□□ -1.75
MSX2P35548 AC083806.3-201ENST00000614016 455 ntBASIC4.11□□□□□ -1.75
MSX2P35548 AL355365.1-201ENST00000616480 294 ntBASIC4.11□□□□□ -1.75
MSX2P35548 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC4.11□□□□□ -1.75
MSX2P35548 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
MSX2P35548 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
MSX2P35548 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.11□□□□□ -1.75
MSX2P35548 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.11□□□□□ -1.75
MSX2P35548 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC4.1□□□□□ -1.75
MSX2P35548 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
MSX2P35548 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
MSX2P35548 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
MSX2P35548 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.1□□□□□ -1.75
MSX2P35548 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
MSX2P35548 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.1□□□□□ -1.75
MSX2P35548 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
MSX2P35548 RNU6-989P-201ENST00000362756 107 ntBASIC4.1□□□□□ -1.75
MSX2P35548 RNU6-1284P-201ENST00000363701 100 ntBASIC4.1□□□□□ -1.75
MSX2P35548 RNU6-637P-201ENST00000384050 107 ntBASIC4.1□□□□□ -1.75
MSX2P35548 RNU6-1032P-201ENST00000384100 107 ntBASIC4.1□□□□□ -1.75
MSX2P35548 RNA5SP219-201ENST00000390940 113 ntBASIC4.1□□□□□ -1.75
MSX2P35548 RNU11-4P-201ENST00000391149 133 ntBASIC4.1□□□□□ -1.75
MSX2P35548 AC097374.1-203ENST00000400783 485 ntBASIC4.1□□□□□ -1.75
MSX2P35548 AL109941.1-201ENST00000401925 229 ntBASIC4.1□□□□□ -1.75
MSX2P35548 AL445189.1-201ENST00000405722 338 ntBASIC4.1□□□□□ -1.75
MSX2P35548 BX682237.1-201ENST00000415016 335 ntBASIC4.1□□□□□ -1.75
MSX2P35548 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4.1□□□□□ -1.75
MSX2P35548 AL160004.2-201ENST00000432935 350 ntBASIC4.1□□□□□ -1.75
MSX2P35548 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC4.1□□□□□ -1.75
MSX2P35548 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC4.1□□□□□ -1.75
MSX2P35548 GAPDHP27-201ENST00000447427 1020 ntBASIC4.1□□□□□ -1.75
MSX2P35548 snoU109.4-201ENST00000458953 143 ntBASIC4.1□□□□□ -1.75
MSX2P35548 DYNLL1P5-201ENST00000467158 270 ntBASIC4.1□□□□□ -1.75
MSX2P35548 HMGB1P25-201ENST00000468402 607 ntBASIC4.1□□□□□ -1.75
MSX2P35548 TRBV1-201ENST00000476502 284 ntBASIC4.1□□□□□ -1.75
MSX2P35548 AC006517.1-201ENST00000480485 328 ntBASIC4.1□□□□□ -1.75
MSX2P35548 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC4.1□□□□□ -1.75
MSX2P35548 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4.1□□□□□ -1.75
MSX2P35548 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC4.1□□□□□ -1.75
MSX2P35548 AC090115.3-201ENST00000553218 849 ntBASIC4.1□□□□□ -1.75
MSX2P35548 MIR3934-201ENST00000579806 107 ntBASIC4.1□□□□□ -1.75
MSX2P35548 IGHV3-29-201ENST00000604817 344 ntBASIC4.1□□□□□ -1.75
MSX2P35548 AC133104.2-201ENST00000615272 193 ntBASIC4.1□□□□□ -1.75
MSX2P35548 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
MSX2P35548 AC008785.1-201ENST00000624475 456 ntBASIC4.1□□□□□ -1.75
MSX2P35548 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.1□□□□□ -1.75
MSX2P35548 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC4.1□□□□□ -1.75
MSX2P35548 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
MSX2P35548 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
MSX2P35548 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.1□□□□□ -1.75
MSX2P35548 KPNA2P1-201ENST00000458289 1591 ntBASIC4.1□□□□□ -1.75
MSX2P35548 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC4.1□□□□□ -1.75
MSX2P35548 EFTUD1P2-201ENST00000514817 1603 ntBASIC4.1□□□□□ -1.75
MSX2P35548 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.1□□□□□ -1.75
MSX2P35548 INTS6P1-201ENST00000504674 2530 ntBASIC4.1□□□□□ -1.75
MSX2P35548 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
MSX2P35548 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.09□□□□□ -1.75
MSX2P35548 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
MSX2P35548 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.09□□□□□ -1.75
MSX2P35548 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
MSX2P35548 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC4.09□□□□□ -1.75
MSX2P35548 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
MSX2P35548 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.09□□□□□ -1.75
MSX2P35548 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
MSX2P35548 AC116667.1-201ENST00000604855 2072 ntBASIC4.09□□□□□ -1.75
MSX2P35548 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.09□□□□□ -1.75
MSX2P35548 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
MSX2P35548 Y_RNA.193-201ENST00000363979 102 ntBASIC4.09□□□□□ -1.75
MSX2P35548 RNA5SP513-201ENST00000364648 118 ntBASIC4.09□□□□□ -1.75
MSX2P35548 RNU6-593P-201ENST00000364716 112 ntBASIC4.09□□□□□ -1.75
MSX2P35548 SMIM11P1-201ENST00000369586 178 ntBASIC4.09□□□□□ -1.75
MSX2P35548 RNU6-505P-201ENST00000384427 107 ntBASIC4.09□□□□□ -1.75
MSX2P35548 SNORA37-201ENST00000384504 129 ntBASIC4.09□□□□□ -1.75
MSX2P35548 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
MSX2P35548 MRPL42P3-201ENST00000401492 326 ntBASIC4.09□□□□□ -1.75
MSX2P35548 RNA5SP113-201ENST00000410486 84 ntBASIC4.09□□□□□ -1.75
MSX2P35548 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.09□□□□□ -1.75
MSX2P35548 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC4.09□□□□□ -1.75
MSX2P35548 AL139095.3-201ENST00000419672 1203 ntBASIC4.09□□□□□ -1.75
MSX2P35548 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC4.09□□□□□ -1.75
MSX2P35548 AL360081.1-201ENST00000428299 555 ntBASIC4.09□□□□□ -1.75
MSX2P35548 LAMTOR3P1-201ENST00000428620 370 ntBASIC4.09□□□□□ -1.75
MSX2P35548 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC4.09□□□□□ -1.75
MSX2P35548 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC4.09□□□□□ -1.75
MSX2P35548 USP9YP7-201ENST00000436723 430 ntBASIC4.09□□□□□ -1.75
MSX2P35548 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC4.09□□□□□ -1.75
MSX2P35548 USP9YP32-201ENST00000452432 430 ntBASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 120.7 ms