Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.59□□□□□ -1.83
HOXC11O43248 AP005136.1-201ENST00000579765 429 ntBASIC3.59□□□□□ -1.83
HOXC11O43248 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXC11O43248 AC080013.6-201ENST00000606185 215 ntBASIC3.59□□□□□ -1.83
HOXC11O43248 AL451064.1-201ENST00000607718 471 ntBASIC3.59□□□□□ -1.83
HOXC11O43248 AC109347.2-201ENST00000610220 349 ntBASIC3.59□□□□□ -1.83
HOXC11O43248 AL589994.2-201ENST00000621124 579 ntBASIC3.59□□□□□ -1.83
HOXC11O43248 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXC11O43248 AP003399.1-201ENST00000637534 361 ntBASIC3.59□□□□□ -1.83
HOXC11O43248 ZNF826P-207ENST00000622273 1910 ntBASIC3.59□□□□□ -1.83
HOXC11O43248 AC103988.1-201ENST00000566382 2177 ntBASIC3.59□□□□□ -1.84
HOXC11O43248 AC006504.1-201ENST00000562493 3666 ntBASIC3.59□□□□□ -1.84
HOXC11O43248 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.59□□□□□ -1.84
HOXC11O43248 AC007656.2-201ENST00000624902 4547 ntBASIC3.59□□□□□ -1.84
HOXC11O43248 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
HOXC11O43248 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
HOXC11O43248 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXC11O43248 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
HOXC11O43248 AL137003.2-201ENST00000606924 2538 ntBASIC3.58□□□□□ -1.84
HOXC11O43248 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXC11O43248 FRG1CP-201ENST00000358464 769 ntBASIC3.58□□□□□ -1.84
HOXC11O43248 Y_RNA.51-201ENST00000362725 102 ntBASIC3.58□□□□□ -1.84
HOXC11O43248 RNU4-1-201ENST00000363925 141 ntBASIC3.58□□□□□ -1.84
HOXC11O43248 RNU5E-6P-201ENST00000365574 115 ntBASIC3.58□□□□□ -1.84
HOXC11O43248 RPL17P50-201ENST00000396131 546 ntBASIC3.58□□□□□ -1.84
HOXC11O43248 RNA5SP120-201ENST00000410900 112 ntBASIC3.58□□□□□ -1.84
HOXC11O43248 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.58□□□□□ -1.84
HOXC11O43248 ZNF90P2-204ENST00000419323 1075 ntBASIC3.58□□□□□ -1.84
HOXC11O43248 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXC11O43248 RPL21P40-201ENST00000428586 483 ntBASIC3.58□□□□□ -1.84
HOXC11O43248 AC009961.2-201ENST00000435771 251 ntBASIC3.58□□□□□ -1.84
HOXC11O43248 AC104850.1-201ENST00000435940 476 ntBASIC3.58□□□□□ -1.84
HOXC11O43248 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC3.58□□□□□ -1.84
HOXC11O43248 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXC11O43248 RN7SL807P-201ENST00000470923 297 ntBASIC3.58□□□□□ -1.84
HOXC11O43248 KCTD9P5-201ENST00000504141 1170 ntBASIC3.58□□□□□ -1.84
HOXC11O43248 AC026427.2-201ENST00000506228 536 ntBASIC3.58□□□□□ -1.84
HOXC11O43248 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXC11O43248 RNU6-1092P-201ENST00000516955 87 ntBASIC3.58□□□□□ -1.84
HOXC11O43248 RNA5SP290-201ENST00000517133 127 ntBASIC3.58□□□□□ -1.84
HOXC11O43248 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.58□□□□□ -1.84
HOXC11O43248 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXC11O43248 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXC11O43248 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXC11O43248 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXC11O43248 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXC11O43248 RPS3AP4-201ENST00000555161 764 ntBASIC3.58□□□□□ -1.84
HOXC11O43248 AL121576.1-201ENST00000556055 276 ntBASIC3.58□□□□□ -1.84
HOXC11O43248 AL845331.3-202ENST00000562856 261 ntBASIC3.58□□□□□ -1.84
HOXC11O43248 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXC11O43248 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXC11O43248 AL358072.1-201ENST00000604156 575 ntBASIC3.58□□□□□ -1.84
HOXC11O43248 AL161729.4-201ENST00000604650 476 ntBASIC3.58□□□□□ -1.84
HOXC11O43248 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.58□□□□□ -1.84
HOXC11O43248 RNVU1-4-201ENST00000612985 164 ntBASIC3.58□□□□□ -1.84
HOXC11O43248 AC072046.2-201ENST00000618366 268 ntBASIC3.58□□□□□ -1.84
HOXC11O43248 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.58□□□□□ -1.84
HOXC11O43248 MIR3651-201ENST00000630427 90 ntBASIC3.58□□□□□ -1.84
HOXC11O43248 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.58□□□□□ -1.84
HOXC11O43248 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC3.58□□□□□ -1.84
HOXC11O43248 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXC11O43248 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
HOXC11O43248 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXC11O43248 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
HOXC11O43248 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.57□□□□□ -1.84
HOXC11O43248 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
HOXC11O43248 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
HOXC11O43248 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.57□□□□□ -1.84
HOXC11O43248 RNA5SP42-201ENST00000364278 115 ntBASIC3.57□□□□□ -1.84
HOXC11O43248 RNU4-40P-201ENST00000364351 143 ntBASIC3.57□□□□□ -1.84
HOXC11O43248 SAR1AP2-201ENST00000392696 594 ntBASIC3.57□□□□□ -1.84
HOXC11O43248 RN7SKP285-201ENST00000410137 318 ntBASIC3.57□□□□□ -1.84
HOXC11O43248 RNU6-248P-201ENST00000410720 107 ntBASIC3.57□□□□□ -1.84
HOXC11O43248 RNU6-195P-201ENST00000411352 109 ntBASIC3.57□□□□□ -1.84
HOXC11O43248 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
HOXC11O43248 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
HOXC11O43248 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.57□□□□□ -1.84
HOXC11O43248 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC3.57□□□□□ -1.84
HOXC11O43248 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.57□□□□□ -1.84
HOXC11O43248 AC104651.1-201ENST00000427559 735 ntBASIC3.57□□□□□ -1.84
HOXC11O43248 AC005300.1-201ENST00000428401 373 ntBASIC3.57□□□□□ -1.84
HOXC11O43248 AC010153.1-201ENST00000432862 727 ntBASIC3.57□□□□□ -1.84
HOXC11O43248 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC3.57□□□□□ -1.84
HOXC11O43248 BX510359.1-201ENST00000456973 237 ntBASIC3.57□□□□□ -1.84
HOXC11O43248 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.57□□□□□ -1.84
HOXC11O43248 AC006483.1-201ENST00000487308 313 ntBASIC3.57□□□□□ -1.84
HOXC11O43248 PCBP2P3-201ENST00000509726 843 ntBASIC3.57□□□□□ -1.84
HOXC11O43248 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC3.57□□□□□ -1.84
HOXC11O43248 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC3.57□□□□□ -1.84
HOXC11O43248 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC3.57□□□□□ -1.84
HOXC11O43248 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
HOXC11O43248 HIGD1AP1-201ENST00000550979 275 ntBASIC3.57□□□□□ -1.84
HOXC11O43248 AC087883.1-201ENST00000551882 391 ntBASIC3.57□□□□□ -1.84
HOXC11O43248 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.57□□□□□ -1.84
HOXC11O43248 AC245014.2-201ENST00000603689 287 ntBASIC3.57□□□□□ -1.84
HOXC11O43248 AC064872.1-201ENST00000604823 1072 ntBASIC3.57□□□□□ -1.84
HOXC11O43248 AC246785.4-201ENST00000605374 287 ntBASIC3.57□□□□□ -1.84
HOXC11O43248 AC006566.1-201ENST00000608943 513 ntBASIC3.57□□□□□ -1.84
HOXC11O43248 AC034102.8-201ENST00000615146 484 ntBASIC3.57□□□□□ -1.84
HOXC11O43248 AC007998.5-201ENST00000622938 237 ntBASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms