Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 WASF1P1-201ENST00000447560 1131 ntBASIC2.74□□□□□ -1.97
FOXA2Q9Y261 AL358232.1-201ENST00000448030 501 ntBASIC2.74□□□□□ -1.97
FOXA2Q9Y261 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC2.74□□□□□ -1.97
FOXA2Q9Y261 AL133217.1-201ENST00000450980 425 ntBASIC2.74□□□□□ -1.97
FOXA2Q9Y261 RPL27AP5-201ENST00000469428 449 ntBASIC2.74□□□□□ -1.97
FOXA2Q9Y261 RBM43P1-201ENST00000476891 1081 ntBASIC2.74□□□□□ -1.97
FOXA2Q9Y261 AP000797.1-201ENST00000478870 387 ntBASIC2.74□□□□□ -1.97
FOXA2Q9Y261 RN7SL432P-201ENST00000484057 298 ntBASIC2.74□□□□□ -1.97
FOXA2Q9Y261 RPL21P129-201ENST00000491732 478 ntBASIC2.74□□□□□ -1.97
FOXA2Q9Y261 AC105252.1-201ENST00000503089 286 ntBASIC2.74□□□□□ -1.97
FOXA2Q9Y261 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.74□□□□□ -1.97
FOXA2Q9Y261 RNA5SP165-201ENST00000517142 115 ntBASIC2.74□□□□□ -1.97
FOXA2Q9Y261 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC2.74□□□□□ -1.97
FOXA2Q9Y261 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC2.74□□□□□ -1.97
FOXA2Q9Y261 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC2.74□□□□□ -1.97
FOXA2Q9Y261 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC2.74□□□□□ -1.97
FOXA2Q9Y261 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC2.74□□□□□ -1.97
FOXA2Q9Y261 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC2.74□□□□□ -1.97
FOXA2Q9Y261 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC2.74□□□□□ -1.97
FOXA2Q9Y261 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC2.74□□□□□ -1.97
FOXA2Q9Y261 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC2.74□□□□□ -1.97
FOXA2Q9Y261 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.74□□□□□ -1.97
FOXA2Q9Y261 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
FOXA2Q9Y261 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC2.73□□□□□ -1.97
FOXA2Q9Y261 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.73□□□□□ -1.97
FOXA2Q9Y261 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC2.73□□□□□ -1.97
FOXA2Q9Y261 AC138915.1-201ENST00000565427 1685 ntBASIC2.73□□□□□ -1.97
FOXA2Q9Y261 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC2.73□□□□□ -1.97
FOXA2Q9Y261 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.73□□□□□ -1.97
FOXA2Q9Y261 AL513477.1-202ENST00000417061 214 ntBASIC2.73□□□□□ -1.97
FOXA2Q9Y261 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC2.73□□□□□ -1.97
FOXA2Q9Y261 Z99497.1-201ENST00000421282 135 ntBASIC2.73□□□□□ -1.97
FOXA2Q9Y261 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
FOXA2Q9Y261 AC019097.1-201ENST00000424783 735 ntBASIC2.73□□□□□ -1.97
FOXA2Q9Y261 AL358075.3-201ENST00000426289 226 ntBASIC2.73□□□□□ -1.97
FOXA2Q9Y261 GCA-203ENST00000429691 824 ntTSL 3 BASIC2.73□□□□□ -1.97
FOXA2Q9Y261 RPL36AP53-201ENST00000432891 316 ntBASIC2.73□□□□□ -1.97
FOXA2Q9Y261 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC2.73□□□□□ -1.97
FOXA2Q9Y261 RPS15AP5-201ENST00000436276 388 ntBASIC2.73□□□□□ -1.97
FOXA2Q9Y261 MTND4P25-201ENST00000441039 533 ntBASIC2.73□□□□□ -1.97
FOXA2Q9Y261 Z96811.1-201ENST00000445880 108 ntBASIC2.73□□□□□ -1.97
FOXA2Q9Y261 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC2.73□□□□□ -1.97
FOXA2Q9Y261 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC2.73□□□□□ -1.97
FOXA2Q9Y261 RNU6-759P-201ENST00000516740 103 ntBASIC2.73□□□□□ -1.97
FOXA2Q9Y261 SNORA31.26-201ENST00000517250 137 ntBASIC2.73□□□□□ -1.97
FOXA2Q9Y261 AC104027.1-201ENST00000521887 300 ntBASIC2.73□□□□□ -1.97
FOXA2Q9Y261 AC107934.1-201ENST00000522215 217 ntBASIC2.73□□□□□ -1.97
FOXA2Q9Y261 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.73□□□□□ -1.97
FOXA2Q9Y261 AP006587.4-201ENST00000526053 529 ntBASIC2.73□□□□□ -1.97
FOXA2Q9Y261 AC011979.2-201ENST00000527568 352 ntBASIC2.73□□□□□ -1.97
FOXA2Q9Y261 OR5B10P-201ENST00000532869 642 ntBASIC2.73□□□□□ -1.97
FOXA2Q9Y261 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC2.73□□□□□ -1.97
FOXA2Q9Y261 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC2.73□□□□□ -1.97
FOXA2Q9Y261 AC010546.1-201ENST00000569391 485 ntBASIC2.73□□□□□ -1.97
FOXA2Q9Y261 MIR5697-201ENST00000578045 78 ntBASIC2.73□□□□□ -1.97
FOXA2Q9Y261 MIR1254-2-201ENST00000579553 63 ntBASIC2.73□□□□□ -1.97
FOXA2Q9Y261 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC2.73□□□□□ -1.97
FOXA2Q9Y261 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC2.73□□□□□ -1.97
FOXA2Q9Y261 AC067852.3-201ENST00000589177 561 ntBASIC2.73□□□□□ -1.97
FOXA2Q9Y261 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
FOXA2Q9Y261 AC008739.3-201ENST00000603262 127 ntBASIC2.73□□□□□ -1.97
FOXA2Q9Y261 AC007619.2-201ENST00000605743 379 ntBASIC2.73□□□□□ -1.97
FOXA2Q9Y261 BX664608.1-201ENST00000610519 487 ntBASIC2.73□□□□□ -1.97
FOXA2Q9Y261 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC2.73□□□□□ -1.97
FOXA2Q9Y261 AL589994.2-201ENST00000621124 579 ntBASIC2.73□□□□□ -1.97
FOXA2Q9Y261 AC099506.2-201ENST00000623074 221 ntBASIC2.73□□□□□ -1.97
FOXA2Q9Y261 AC091953.2-201ENST00000623979 160 ntBASIC2.73□□□□□ -1.97
FOXA2Q9Y261 AL359693.1-201ENST00000614959 2407 ntBASIC2.73□□□□□ -1.97
FOXA2Q9Y261 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.73□□□□□ -1.97
FOXA2Q9Y261 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC2.73□□□□□ -1.97
FOXA2Q9Y261 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC2.73□□□□□ -1.97
FOXA2Q9Y261 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.72□□□□□ -1.97
FOXA2Q9Y261 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
FOXA2Q9Y261 RNA5SP50-201ENST00000363731 107 ntBASIC2.72□□□□□ -1.97
FOXA2Q9Y261 RNU6-553P-201ENST00000364047 96 ntBASIC2.72□□□□□ -1.97
FOXA2Q9Y261 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
FOXA2Q9Y261 SNORD115.1-201ENST00000391109 76 ntBASIC2.72□□□□□ -1.97
FOXA2Q9Y261 SNORA48.7-201ENST00000391302 135 ntBASIC2.72□□□□□ -1.97
FOXA2Q9Y261 MRPL42P2-201ENST00000403169 426 ntBASIC2.72□□□□□ -1.97
FOXA2Q9Y261 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
FOXA2Q9Y261 RNU2-36P-201ENST00000410361 191 ntBASIC2.72□□□□□ -1.97
FOXA2Q9Y261 RNA5SP293-201ENST00000410527 113 ntBASIC2.72□□□□□ -1.97
FOXA2Q9Y261 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC2.72□□□□□ -1.97
FOXA2Q9Y261 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC2.72□□□□□ -1.97
FOXA2Q9Y261 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC2.72□□□□□ -1.97
FOXA2Q9Y261 PRDX3P3-201ENST00000447765 522 ntBASIC2.72□□□□□ -1.97
FOXA2Q9Y261 ST13P20-201ENST00000447996 1065 ntBASIC2.72□□□□□ -1.97
FOXA2Q9Y261 RPL37P4-201ENST00000448908 268 ntBASIC2.72□□□□□ -1.97
FOXA2Q9Y261 KATNBL1P6-201ENST00000453433 915 ntBASIC2.72□□□□□ -1.97
FOXA2Q9Y261 RBMY2UP-201ENST00000453474 324 ntBASIC2.72□□□□□ -1.97
FOXA2Q9Y261 ART2BP-201ENST00000453501 499 ntBASIC2.72□□□□□ -1.97
FOXA2Q9Y261 RPL31P41-201ENST00000477967 372 ntBASIC2.72□□□□□ -1.97
FOXA2Q9Y261 MRPS36P2-201ENST00000512569 299 ntBASIC2.72□□□□□ -1.97
FOXA2Q9Y261 SNORA31.3-201ENST00000516029 96 ntBASIC2.72□□□□□ -1.97
FOXA2Q9Y261 RNU2-10P-201ENST00000516375 211 ntBASIC2.72□□□□□ -1.97
FOXA2Q9Y261 SNORA64.4-201ENST00000516632 81 ntBASIC2.72□□□□□ -1.97
FOXA2Q9Y261 RNU6-56P-201ENST00000516986 93 ntBASIC2.72□□□□□ -1.97
FOXA2Q9Y261 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC2.72□□□□□ -1.97
FOXA2Q9Y261 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC2.72□□□□□ -1.97
FOXA2Q9Y261 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC2.72□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 92.6 ms