Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 MIR422A-201ENST00000362286 90 ntBASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 RNU6-884P-201ENST00000363889 107 ntBASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 SNORA38-201ENST00000363946 132 ntBASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 RNU6-621P-201ENST00000364752 109 ntBASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 RNU6-413P-201ENST00000384115 107 ntBASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 Y_RNA.472-201ENST00000384322 102 ntBASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 U3.26-201ENST00000391236 204 ntBASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 UBA52P6-201ENST00000399822 382 ntBASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 MIR1284-201ENST00000408337 120 ntBASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 RNU4-22P-201ENST00000411058 166 ntBASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 SSR1P2-201ENST00000415208 787 ntBASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 MTND1P26-201ENST00000440488 538 ntBASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 RPL23AP76-201ENST00000441860 458 ntBASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 COX6CP12-201ENST00000446748 202 ntBASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 MTND1P31-201ENST00000449206 961 ntBASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 GSTA11P-201ENST00000452866 669 ntBASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 RPS27AP9-201ENST00000477681 438 ntBASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 RPS3AP14-201ENST00000483907 780 ntBASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 RNU1-104P-201ENST00000517280 175 ntBASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 AC090888.2-201ENST00000559765 1144 ntBASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 MTCO3P13-201ENST00000577757 781 ntBASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 AF038458.1-201ENST00000588406 262 ntBASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 AF131215.7-201ENST00000602443 707 ntBASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 AC090186.1-201ENST00000605991 572 ntBASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 AC013562.2-201ENST00000611632 603 ntBASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 AC138932.5-201ENST00000617759 563 ntBASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 LINC02211-204ENST00000642024 1070 ntBASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 AL359693.1-201ENST00000614959 2407 ntBASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
ZNF540Q8NDQ6 AL365361.1-201ENST00000566942 3481 ntBASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 RNU6-7-201ENST00000364784 107 ntBASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 Y_RNA.311-201ENST00000365068 96 ntBASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 RNU6-8-201ENST00000365467 107 ntBASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 RNU1-39P-201ENST00000383897 165 ntBASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 AL590004.2-201ENST00000404787 371 ntBASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 NDUFS5P4-201ENST00000412983 318 ntBASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 VPS26BP1-201ENST00000417155 755 ntBASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 AC092648.1-201ENST00000425870 423 ntBASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 RPS29P6-201ENST00000438196 145 ntBASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 RPL39P40-201ENST00000445481 146 ntBASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 Z75741.1-201ENST00000446793 314 ntBASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 S100A11P2-201ENST00000467589 312 ntBASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 RBM43P1-201ENST00000476891 1081 ntBASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 AC109445.1-201ENST00000512356 383 ntBASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 AC112673.1-201ENST00000513168 575 ntBASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 BTF3P12-201ENST00000519620 469 ntBASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 EEF1A1P37-201ENST00000522748 715 ntBASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 AL359212.1-201ENST00000556608 614 ntBASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 H3F3AP1-201ENST00000559984 334 ntBASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 AC023824.2-201ENST00000566185 400 ntBASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 MIR4446-201ENST00000578505 67 ntBASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 MIR5194-201ENST00000582634 120 ntBASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 PRELID3BP8-201ENST00000604148 295 ntBASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 MTND4LP5-201ENST00000605152 292 ntBASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 PART1_2.1-201ENST00000612397 250 ntBASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 AL158163.2-201ENST00000619110 700 ntBASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 AP002791.1-201ENST00000623291 381 ntBASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
ZNF540Q8NDQ6 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 CPD-202ENST00000543464 4007 ntTSL 2 BASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 ASNSP3-201ENST00000451989 1306 ntBASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.73□□□□□ -1.97
ZNF540Q8NDQ6 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms