Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC3.55□□□□□ -1.84
HOXA4Q00056 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXA4Q00056 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXA4Q00056 GAS5-208ENST00000425771 242 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXA4Q00056 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXA4Q00056 UQCRHP4-201ENST00000471686 272 ntBASIC3.55□□□□□ -1.84
HOXA4Q00056 AC096576.1-201ENST00000489014 359 ntBASIC3.55□□□□□ -1.84
HOXA4Q00056 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXA4Q00056 KLHL2P1-201ENST00000508691 521 ntBASIC3.55□□□□□ -1.84
HOXA4Q00056 RNU6-189P-201ENST00000516120 101 ntBASIC3.55□□□□□ -1.84
HOXA4Q00056 RNU6-256P-201ENST00000516747 97 ntBASIC3.55□□□□□ -1.84
HOXA4Q00056 RNU6-352P-201ENST00000516908 107 ntBASIC3.55□□□□□ -1.84
HOXA4Q00056 Y_RNA.718-201ENST00000517110 102 ntBASIC3.55□□□□□ -1.84
HOXA4Q00056 RNU6-840P-201ENST00000517275 65 ntBASIC3.55□□□□□ -1.84
HOXA4Q00056 AC134698.5-201ENST00000519444 336 ntBASIC3.55□□□□□ -1.84
HOXA4Q00056 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXA4Q00056 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
HOXA4Q00056 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXA4Q00056 AC020661.2-201ENST00000560114 134 ntBASIC3.55□□□□□ -1.84
HOXA4Q00056 AC022655.2-201ENST00000577280 318 ntBASIC3.55□□□□□ -1.84
HOXA4Q00056 RN7SL600P-201ENST00000581811 299 ntBASIC3.55□□□□□ -1.84
HOXA4Q00056 IPO5P1-202ENST00000600039 287 ntBASIC3.55□□□□□ -1.84
HOXA4Q00056 ATP1B3P1-201ENST00000605365 821 ntBASIC3.55□□□□□ -1.84
HOXA4Q00056 AL627309.6-201ENST00000606857 840 ntBASIC3.55□□□□□ -1.84
HOXA4Q00056 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXA4Q00056 AC009570.1-201ENST00000609599 745 ntBASIC3.55□□□□□ -1.84
HOXA4Q00056 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXA4Q00056 AC015967.1-201ENST00000619893 476 ntBASIC3.55□□□□□ -1.84
HOXA4Q00056 USP12-203ENST00000620323 349 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXA4Q00056 MIR3653-201ENST00000625572 110 ntBASIC3.55□□□□□ -1.84
HOXA4Q00056 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXA4Q00056 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXA4Q00056 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC3.55□□□□□ -1.84
HOXA4Q00056 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HOXA4Q00056 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
HOXA4Q00056 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC3.55□□□□□ -1.84
HOXA4Q00056 MFSD8-242ENST00000641690 4199 ntBASIC3.55□□□□□ -1.84
HOXA4Q00056 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXA4Q00056 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.54□□□□□ -1.84
HOXA4Q00056 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC3.54□□□□□ -1.84
HOXA4Q00056 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
HOXA4Q00056 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
HOXA4Q00056 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
HOXA4Q00056 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
HOXA4Q00056 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.54□□□□□ -1.84
HOXA4Q00056 AC093908.1-201ENST00000623125 8092 ntBASIC3.54□□□□□ -1.84
HOXA4Q00056 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
HOXA4Q00056 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
HOXA4Q00056 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
HOXA4Q00056 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC3.54□□□□□ -1.84
HOXA4Q00056 RNU1-94P-201ENST00000362627 173 ntBASIC3.54□□□□□ -1.84
HOXA4Q00056 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
HOXA4Q00056 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
HOXA4Q00056 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC3.54□□□□□ -1.84
HOXA4Q00056 AC244098.2-201ENST00000422068 99 ntBASIC3.54□□□□□ -1.84
HOXA4Q00056 MTCO1P39-201ENST00000426148 480 ntBASIC3.54□□□□□ -1.84
HOXA4Q00056 AC104058.1-201ENST00000448028 297 ntBASIC3.54□□□□□ -1.84
HOXA4Q00056 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC3.54□□□□□ -1.84
HOXA4Q00056 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC3.54□□□□□ -1.84
HOXA4Q00056 AP000942.1-201ENST00000463969 747 ntBASIC3.54□□□□□ -1.84
HOXA4Q00056 DYNLL1P5-201ENST00000467158 270 ntBASIC3.54□□□□□ -1.84
HOXA4Q00056 RPL23AP2-201ENST00000471227 466 ntBASIC3.54□□□□□ -1.84
HOXA4Q00056 AC012181.1-201ENST00000479895 423 ntBASIC3.54□□□□□ -1.84
HOXA4Q00056 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC3.54□□□□□ -1.84
HOXA4Q00056 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.54□□□□□ -1.84
HOXA4Q00056 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC3.54□□□□□ -1.84
HOXA4Q00056 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC3.54□□□□□ -1.84
HOXA4Q00056 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC3.54□□□□□ -1.84
HOXA4Q00056 PARP4P3-201ENST00000510265 317 ntBASIC3.54□□□□□ -1.84
HOXA4Q00056 AC005741.1-201ENST00000511094 432 ntBASIC3.54□□□□□ -1.84
HOXA4Q00056 RN7SKP122-201ENST00000515923 296 ntBASIC3.54□□□□□ -1.84
HOXA4Q00056 RNA5SP360-201ENST00000516555 118 ntBASIC3.54□□□□□ -1.84
HOXA4Q00056 RN7SKP258-201ENST00000517151 304 ntBASIC3.54□□□□□ -1.84
HOXA4Q00056 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC3.54□□□□□ -1.84
HOXA4Q00056 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.54□□□□□ -1.84
HOXA4Q00056 AC106782.4-201ENST00000568264 210 ntBASIC3.54□□□□□ -1.84
HOXA4Q00056 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.54□□□□□ -1.84
HOXA4Q00056 AC174048.1-201ENST00000603389 144 ntBASIC3.54□□□□□ -1.84
HOXA4Q00056 AP001330.4-201ENST00000604350 154 ntBASIC3.54□□□□□ -1.84
HOXA4Q00056 RNA5SP108-201ENST00000605921 117 ntBASIC3.54□□□□□ -1.84
HOXA4Q00056 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC3.54□□□□□ -1.84
HOXA4Q00056 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
HOXA4Q00056 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.54□□□□□ -1.84
HOXA4Q00056 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
HOXA4Q00056 AC009812.4-201ENST00000569134 1805 ntBASIC3.54□□□□□ -1.84
HOXA4Q00056 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC3.53□□□□□ -1.84
HOXA4Q00056 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC3.53□□□□□ -1.84
HOXA4Q00056 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
HOXA4Q00056 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.53□□□□□ -1.84
HOXA4Q00056 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
HOXA4Q00056 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC3.53□□□□□ -1.84
HOXA4Q00056 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.53□□□□□ -1.84
HOXA4Q00056 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
HOXA4Q00056 RNU6-715P-201ENST00000365204 103 ntBASIC3.53□□□□□ -1.84
HOXA4Q00056 RNU6-474P-201ENST00000384243 107 ntBASIC3.53□□□□□ -1.84
HOXA4Q00056 SNORA36C-201ENST00000384289 132 ntBASIC3.53□□□□□ -1.84
HOXA4Q00056 RNU6-1297P-201ENST00000384415 104 ntBASIC3.53□□□□□ -1.84
HOXA4Q00056 RNU6-393P-201ENST00000384475 107 ntBASIC3.53□□□□□ -1.84
HOXA4Q00056 MIR124-3-201ENST00000384866 87 ntBASIC3.53□□□□□ -1.84
HOXA4Q00056 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 126.5 ms