Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 Y_RNA.688-201ENST00000516565 95 ntBASIC3.46□□□□□ -1.85
ZNF541Q9H0D2 RNU6-798P-201ENST00000516912 103 ntBASIC3.46□□□□□ -1.85
ZNF541Q9H0D2 AC025881.1-201ENST00000518851 512 ntBASIC3.46□□□□□ -1.85
ZNF541Q9H0D2 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC3.46□□□□□ -1.85
ZNF541Q9H0D2 AP001804.3-201ENST00000525146 880 ntBASIC3.46□□□□□ -1.85
ZNF541Q9H0D2 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC3.46□□□□□ -1.85
ZNF541Q9H0D2 AC107016.2-201ENST00000547968 190 ntBASIC3.46□□□□□ -1.85
ZNF541Q9H0D2 AC135628.1-201ENST00000568867 534 ntBASIC3.46□□□□□ -1.85
ZNF541Q9H0D2 MIR4307-201ENST00000582802 84 ntBASIC3.46□□□□□ -1.85
ZNF541Q9H0D2 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.46□□□□□ -1.85
ZNF541Q9H0D2 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.46□□□□□ -1.85
ZNF541Q9H0D2 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC3.46□□□□□ -1.85
ZNF541Q9H0D2 U1.23-201ENST00000610293 146 ntBASIC3.46□□□□□ -1.85
ZNF541Q9H0D2 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC3.46□□□□□ -1.85
ZNF541Q9H0D2 RNU1-68P-201ENST00000615382 146 ntBASIC3.46□□□□□ -1.85
ZNF541Q9H0D2 MIR6817-201ENST00000615588 66 ntBASIC3.46□□□□□ -1.85
ZNF541Q9H0D2 AC027807.2-201ENST00000616099 408 ntBASIC3.46□□□□□ -1.85
ZNF541Q9H0D2 U1.39-201ENST00000621562 146 ntBASIC3.46□□□□□ -1.85
ZNF541Q9H0D2 AC068057.2-201ENST00000624047 895 ntBASIC3.46□□□□□ -1.85
ZNF541Q9H0D2 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.46□□□□□ -1.86
ZNF541Q9H0D2 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC3.46□□□□□ -1.86
ZNF541Q9H0D2 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
ZNF541Q9H0D2 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC3.46□□□□□ -1.86
ZNF541Q9H0D2 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
ZNF541Q9H0D2 AC011460.1-201ENST00000636268 1834 ntBASIC3.46□□□□□ -1.86
ZNF541Q9H0D2 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 RNY4P24-201ENST00000362735 96 ntBASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 RNU6-637P-201ENST00000384050 107 ntBASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 SNORD116-2-201ENST00000384274 95 ntBASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 RNU6-769P-201ENST00000384407 104 ntBASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 RNU6-809P-201ENST00000384461 107 ntBASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 SNORD116-6-201ENST00000384711 96 ntBASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 RN7SKP285-201ENST00000410137 318 ntBASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 AL445669.1-201ENST00000426743 755 ntBASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 AC024082.2-201ENST00000434771 238 ntBASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 BMI1P1-201ENST00000445879 941 ntBASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 MTATP6P26-201ENST00000445926 662 ntBASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 HMGB3P8-201ENST00000449709 577 ntBASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 AC104308.1-201ENST00000454621 333 ntBASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 AC092754.2-201ENST00000463506 460 ntBASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 AC104027.1-201ENST00000521887 300 ntBASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 AP000907.2-201ENST00000530827 353 ntBASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 Z94722.1-201ENST00000604328 474 ntBASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 AC090425.2-201ENST00000608818 501 ntBASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 AC012360.2-201ENST00000609349 391 ntBASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 OR10AB1P-201ENST00000609613 938 ntBASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 AC009268.2-201ENST00000621925 457 ntBASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 AC112204.3-201ENST00000623822 332 ntBASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 AC012321.1-201ENST00000561622 1588 ntBASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 AC006378.2-201ENST00000623178 2476 ntBASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 AP003122.5-201ENST00000527668 3766 ntBASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC3.45□□□□□ -1.86
ZNF541Q9H0D2 RNA5SP68-201ENST00000363885 119 ntBASIC3.44□□□□□ -1.86
ZNF541Q9H0D2 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC3.44□□□□□ -1.86
ZNF541Q9H0D2 DEFB109C-201ENST00000382575 264 ntBASIC3.44□□□□□ -1.86
ZNF541Q9H0D2 DEFB109B-201ENST00000382656 264 ntBASIC3.44□□□□□ -1.86
ZNF541Q9H0D2 RNU6-432P-201ENST00000384196 109 ntBASIC3.44□□□□□ -1.86
ZNF541Q9H0D2 RNU6-278P-201ENST00000390945 109 ntBASIC3.44□□□□□ -1.86
ZNF541Q9H0D2 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC3.44□□□□□ -1.86
ZNF541Q9H0D2 AL138827.1-201ENST00000402666 306 ntBASIC3.44□□□□□ -1.86
ZNF541Q9H0D2 AL021407.1-201ENST00000404531 386 ntBASIC3.44□□□□□ -1.86
ZNF541Q9H0D2 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.44□□□□□ -1.86
ZNF541Q9H0D2 LARP1BP3-201ENST00000437229 869 ntBASIC3.44□□□□□ -1.86
ZNF541Q9H0D2 HMGB1P12-201ENST00000438594 598 ntBASIC3.44□□□□□ -1.86
ZNF541Q9H0D2 ISCA1P2-201ENST00000438679 421 ntBASIC3.44□□□□□ -1.86
ZNF541Q9H0D2 MTND2P22-201ENST00000444325 1033 ntBASIC3.44□□□□□ -1.86
ZNF541Q9H0D2 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.44□□□□□ -1.86
ZNF541Q9H0D2 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC3.44□□□□□ -1.86
ZNF541Q9H0D2 RPL23AP14-201ENST00000468281 468 ntBASIC3.44□□□□□ -1.86
ZNF541Q9H0D2 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC3.44□□□□□ -1.86
ZNF541Q9H0D2 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
ZNF541Q9H0D2 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC3.44□□□□□ -1.86
ZNF541Q9H0D2 RNA5SP468-201ENST00000516782 93 ntBASIC3.44□□□□□ -1.86
ZNF541Q9H0D2 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC3.44□□□□□ -1.86
ZNF541Q9H0D2 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC3.44□□□□□ -1.86
ZNF541Q9H0D2 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.44□□□□□ -1.86
ZNF541Q9H0D2 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
ZNF541Q9H0D2 AL133271.1-201ENST00000538229 291 ntBASIC3.44□□□□□ -1.86
ZNF541Q9H0D2 AC125611.2-201ENST00000551907 647 ntBASIC3.44□□□□□ -1.86
ZNF541Q9H0D2 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.44□□□□□ -1.86
ZNF541Q9H0D2 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC3.44□□□□□ -1.86
ZNF541Q9H0D2 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.44□□□□□ -1.86
ZNF541Q9H0D2 SNORD53-201ENST00000579969 78 ntBASIC3.44□□□□□ -1.86
ZNF541Q9H0D2 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
ZNF541Q9H0D2 AC068790.3-201ENST00000602988 553 ntBASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms