Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 SNORA4.1-201ENST00000364263 144 ntBASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 MIR128-1-201ENST00000384921 82 ntBASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 U3.20-201ENST00000390909 217 ntBASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 AL139095.1-201ENST00000404326 391 ntBASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 MIR320C1-201ENST00000408566 88 ntBASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 RNU6-757P-201ENST00000410334 100 ntBASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 BX682237.1-201ENST00000415016 335 ntBASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 AC091390.3-201ENST00000426478 338 ntBASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 AC087499.2-201ENST00000432861 149 ntBASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 AC112220.1-201ENST00000434628 355 ntBASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 BMI1P1-201ENST00000445879 941 ntBASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 RPS20P20-201ENST00000460498 340 ntBASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 S100A11P2-201ENST00000467589 312 ntBASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 RPS27P26-201ENST00000494583 239 ntBASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 HMGB1P41-201ENST00000520234 440 ntBASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 AC090888.1-201ENST00000561335 1141 ntBASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 AL049838.1-201ENST00000563647 981 ntBASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 UBE2L4-201ENST00000587688 464 ntBASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 AL137843.1-201ENST00000605078 385 ntBASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 AL139344.1-201ENST00000605228 195 ntBASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 AL158801.5-201ENST00000623123 465 ntBASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 AC073308.1-201ENST00000623696 305 ntBASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.96□□□□□ -1.94
CCDC40Q4G0X9 AC009902.3-201ENST00000606235 2172 ntBASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 GNG5P1-201ENST00000255500 204 ntBASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 RNU1-105P-201ENST00000363470 161 ntBASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 SNORA9-201ENST00000384215 133 ntBASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 AL590084.2-201ENST00000401481 382 ntBASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 MTCO1P17-201ENST00000411522 491 ntBASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 PIGPP2-201ENST00000411569 458 ntBASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 AC099548.1-201ENST00000421443 426 ntBASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 AL365496.1-201ENST00000426885 215 ntBASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 AL714022.1-201ENST00000439897 151 ntBASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 BNIP3P2-201ENST00000441221 577 ntBASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 AL135938.1-201ENST00000443141 297 ntBASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 MTND4LP3-201ENST00000468320 276 ntBASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 AC116337.2-201ENST00000477662 156 ntBASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 AC135721.1-201ENST00000497954 479 ntBASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 TBCAP3-201ENST00000512475 312 ntBASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 MTCYBP43-201ENST00000513621 740 ntBASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 RNA5SP216-201ENST00000516111 123 ntBASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 NRON-201ENST00000517270 370 ntBASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 HMGN1P28-201ENST00000521340 364 ntBASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 AC007954.1-201ENST00000554198 494 ntBASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 MIR4635-201ENST00000583759 79 ntBASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 VN1R82P-201ENST00000601481 356 ntBASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 AL356575.1-201ENST00000603008 283 ntBASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 UBE2Q2P6-201ENST00000612666 153 ntBASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 AC016597.2-201ENST00000613256 341 ntBASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 AP001002.2-201ENST00000625137 386 ntBASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC2.95□□□□□ -1.94
CCDC40Q4G0X9 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC2.94□□□□□ -1.94
CCDC40Q4G0X9 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC2.94□□□□□ -1.94
CCDC40Q4G0X9 RNU1-112P-201ENST00000364401 164 ntBASIC2.94□□□□□ -1.94
CCDC40Q4G0X9 AL356057.2-201ENST00000403318 432 ntBASIC2.94□□□□□ -1.94
CCDC40Q4G0X9 RNU6-193P-201ENST00000410977 107 ntBASIC2.94□□□□□ -1.94
CCDC40Q4G0X9 AC009414.1-201ENST00000427200 443 ntBASIC2.94□□□□□ -1.94
CCDC40Q4G0X9 RSU1P2-202ENST00000437884 485 ntBASIC2.94□□□□□ -1.94
CCDC40Q4G0X9 Z82210.1-201ENST00000440037 231 ntBASIC2.94□□□□□ -1.94
CCDC40Q4G0X9 CYCSP32-201ENST00000440548 321 ntBASIC2.94□□□□□ -1.94
CCDC40Q4G0X9 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC2.94□□□□□ -1.94
CCDC40Q4G0X9 IGKV1OR-3-201ENST00000446944 348 ntBASIC2.94□□□□□ -1.94
CCDC40Q4G0X9 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC2.94□□□□□ -1.94
CCDC40Q4G0X9 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC2.94□□□□□ -1.94
CCDC40Q4G0X9 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.94□□□□□ -1.94
CCDC40Q4G0X9 AC093809.1-201ENST00000509155 340 ntBASIC2.94□□□□□ -1.94
CCDC40Q4G0X9 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC2.94□□□□□ -1.94
CCDC40Q4G0X9 AC025881.1-201ENST00000518851 512 ntBASIC2.94□□□□□ -1.94
CCDC40Q4G0X9 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC2.94□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 125.8 ms