Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HPS3Q969F9 RN7SL132P-201ENST00000478131 296 ntBASIC4.24□□□□□ -1.73
HPS3Q969F9 RN7SL432P-201ENST00000484057 298 ntBASIC4.24□□□□□ -1.73
HPS3Q969F9 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.24□□□□□ -1.73
HPS3Q969F9 BTF3L4P4-201ENST00000506381 449 ntBASIC4.24□□□□□ -1.73
HPS3Q969F9 SNORA70.14-201ENST00000516205 110 ntBASIC4.24□□□□□ -1.73
HPS3Q969F9 RNU6-1178P-201ENST00000516674 107 ntBASIC4.24□□□□□ -1.73
HPS3Q969F9 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC4.24□□□□□ -1.73
HPS3Q969F9 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HPS3Q969F9 AL512360.1-201ENST00000555346 234 ntBASIC4.24□□□□□ -1.73
HPS3Q969F9 HMGB1P6-201ENST00000569046 646 ntBASIC4.24□□□□□ -1.73
HPS3Q969F9 MIR4286-201ENST00000580651 93 ntBASIC4.24□□□□□ -1.73
HPS3Q969F9 MIR4801-201ENST00000582704 82 ntBASIC4.24□□□□□ -1.73
HPS3Q969F9 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC4.24□□□□□ -1.73
HPS3Q969F9 AC110741.2-201ENST00000605278 268 ntBASIC4.24□□□□□ -1.73
HPS3Q969F9 SRP54-214ENST00000630962 162 ntTSL 5 BASIC4.24□□□□□ -1.73
HPS3Q969F9 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
HPS3Q969F9 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
HPS3Q969F9 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HPS3Q969F9 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.24□□□□□ -1.73
HPS3Q969F9 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC4.24□□□□□ -1.73
HPS3Q969F9 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.24□□□□□ -1.73
HPS3Q969F9 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HPS3Q969F9 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC4.23□□□□□ -1.73
HPS3Q969F9 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
HPS3Q969F9 RNU6-600P-201ENST00000362524 99 ntBASIC4.23□□□□□ -1.73
HPS3Q969F9 SNORA62.3-201ENST00000365110 153 ntBASIC4.23□□□□□ -1.73
HPS3Q969F9 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.23□□□□□ -1.73
HPS3Q969F9 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.23□□□□□ -1.73
HPS3Q969F9 RNU1-39P-201ENST00000383897 165 ntBASIC4.23□□□□□ -1.73
HPS3Q969F9 U1.1-201ENST00000384101 164 ntBASIC4.23□□□□□ -1.73
HPS3Q969F9 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HPS3Q969F9 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC4.23□□□□□ -1.73
HPS3Q969F9 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC4.23□□□□□ -1.73
HPS3Q969F9 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HPS3Q969F9 HMGB3P12-201ENST00000438745 556 ntBASIC4.23□□□□□ -1.73
HPS3Q969F9 AF228730.2-201ENST00000438784 848 ntBASIC4.23□□□□□ -1.73
HPS3Q969F9 RPS29P7-201ENST00000439662 171 ntBASIC4.23□□□□□ -1.73
HPS3Q969F9 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC4.23□□□□□ -1.73
HPS3Q969F9 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HPS3Q969F9 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC4.23□□□□□ -1.73
HPS3Q969F9 ANP32BP2-201ENST00000454525 545 ntBASIC4.23□□□□□ -1.73
HPS3Q969F9 HSPE1P6-201ENST00000479457 291 ntBASIC4.23□□□□□ -1.73
HPS3Q969F9 VN1R105P-201ENST00000486595 910 ntBASIC4.23□□□□□ -1.73
HPS3Q969F9 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC4.23□□□□□ -1.73
HPS3Q969F9 ARL4AP2-201ENST00000507378 601 ntBASIC4.23□□□□□ -1.73
HPS3Q969F9 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC4.23□□□□□ -1.73
HPS3Q969F9 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC4.23□□□□□ -1.73
HPS3Q969F9 Y_RNA.693-201ENST00000516641 110 ntBASIC4.23□□□□□ -1.73
HPS3Q969F9 RNU6-1092P-201ENST00000516955 87 ntBASIC4.23□□□□□ -1.73
HPS3Q969F9 PTS-202ENST00000524931 696 ntTSL 3 BASIC4.23□□□□□ -1.73
HPS3Q969F9 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HPS3Q969F9 OR5AQ1P-201ENST00000527596 927 ntBASIC4.23□□□□□ -1.73
HPS3Q969F9 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.23□□□□□ -1.73
HPS3Q969F9 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC4.23□□□□□ -1.73
HPS3Q969F9 AC010133.1-201ENST00000615809 842 ntBASIC4.23□□□□□ -1.73
HPS3Q969F9 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.23□□□□□ -1.73
HPS3Q969F9 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC4.23□□□□□ -1.73
HPS3Q969F9 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC4.23□□□□□ -1.73
HPS3Q969F9 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC4.23□□□□□ -1.73
HPS3Q969F9 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.23□□□□□ -1.73
HPS3Q969F9 USP8P1-201ENST00000494673 3183 ntBASIC4.22□□□□□ -1.73
HPS3Q969F9 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC4.22□□□□□ -1.73
HPS3Q969F9 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.22□□□□□ -1.73
HPS3Q969F9 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC4.22□□□□□ -1.73
HPS3Q969F9 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.22□□□□□ -1.73
HPS3Q969F9 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HPS3Q969F9 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HPS3Q969F9 RNU6-960P-201ENST00000364056 120 ntBASIC4.22□□□□□ -1.73
HPS3Q969F9 RNU6-1322P-201ENST00000364309 107 ntBASIC4.22□□□□□ -1.73
HPS3Q969F9 Y_RNA.402-201ENST00000383972 102 ntBASIC4.22□□□□□ -1.73
HPS3Q969F9 Y_RNA.450-201ENST00000384198 113 ntBASIC4.22□□□□□ -1.73
HPS3Q969F9 Y_RNA.573-201ENST00000384763 105 ntBASIC4.22□□□□□ -1.73
HPS3Q969F9 MIR1-2-201ENST00000384961 85 ntBASIC4.22□□□□□ -1.73
HPS3Q969F9 SNORD115-47-201ENST00000391226 86 ntBASIC4.22□□□□□ -1.73
HPS3Q969F9 RPL32P23-201ENST00000397237 405 ntBASIC4.22□□□□□ -1.73
HPS3Q969F9 AL451062.2-201ENST00000427515 271 ntBASIC4.22□□□□□ -1.73
HPS3Q969F9 MRPS10P2-201ENST00000431226 381 ntBASIC4.22□□□□□ -1.73
HPS3Q969F9 VDAC1P3-201ENST00000434069 851 ntBASIC4.22□□□□□ -1.73
HPS3Q969F9 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC4.22□□□□□ -1.73
HPS3Q969F9 RPL21P11-201ENST00000461458 483 ntBASIC4.22□□□□□ -1.73
HPS3Q969F9 AL121769.1-201ENST00000469473 401 ntBASIC4.22□□□□□ -1.73
HPS3Q969F9 RN7SL323P-201ENST00000494712 295 ntBASIC4.22□□□□□ -1.73
HPS3Q969F9 RPL23AP55-201ENST00000498163 452 ntBASIC4.22□□□□□ -1.73
HPS3Q969F9 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.22□□□□□ -1.73
HPS3Q969F9 AC117522.1-201ENST00000509821 380 ntBASIC4.22□□□□□ -1.73
HPS3Q969F9 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC4.22□□□□□ -1.73
HPS3Q969F9 ARL2BPP6-201ENST00000512757 439 ntBASIC4.22□□□□□ -1.73
HPS3Q969F9 SNORA31.8-201ENST00000516327 108 ntBASIC4.22□□□□□ -1.73
HPS3Q969F9 AL157687.1-201ENST00000554853 619 ntBASIC4.22□□□□□ -1.73
HPS3Q969F9 AC025678.1-201ENST00000567861 338 ntBASIC4.22□□□□□ -1.73
HPS3Q969F9 MIR4429-201ENST00000580105 73 ntBASIC4.22□□□□□ -1.73
HPS3Q969F9 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC4.22□□□□□ -1.73
HPS3Q969F9 AC025449.1-201ENST00000603896 529 ntBASIC4.22□□□□□ -1.73
HPS3Q969F9 AP001330.5-201ENST00000607176 411 ntBASIC4.22□□□□□ -1.73
HPS3Q969F9 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC4.22□□□□□ -1.73
HPS3Q969F9 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC4.22□□□□□ -1.73
HPS3Q969F9 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC4.22□□□□□ -1.73
HPS3Q969F9 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
HPS3Q969F9 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 125.6 ms