Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 Y_RNA.364-201ENST00000365532 101 ntBASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 Y_RNA.452-201ENST00000384202 108 ntBASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 Y_RNA.473-201ENST00000384333 102 ntBASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 RNU6-14P-201ENST00000384630 106 ntBASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 SNORA75.6-201ENST00000391318 127 ntBASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 Y_RNA.594-201ENST00000410373 140 ntBASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 AC236972.1-201ENST00000433225 199 ntBASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 CKS1BP5-201ENST00000434172 273 ntBASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 AC108059.2-201ENST00000434626 151 ntBASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 HIGD1AP11-201ENST00000438361 280 ntBASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 RPS11P1-201ENST00000451072 473 ntBASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 CEACAMP6-201ENST00000452007 574 ntBASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 RPL12P25-201ENST00000455592 494 ntBASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 MTATP8P1-201ENST00000467115 207 ntBASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 RPL21P103-201ENST00000479921 488 ntBASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 AC021146.3-201ENST00000511911 260 ntBASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 RNA5SP249-201ENST00000516127 99 ntBASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 AC008269.2-201ENST00000561915 1105 ntBASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 MIR4270-201ENST00000581799 70 ntBASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 SDR42E1P2-201ENST00000614861 481 ntBASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.51□□□□□ -1.69
PTCHD1Q96NR3 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 RNU6-288P-201ENST00000363690 104 ntBASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 RNU6-95P-201ENST00000384697 107 ntBASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 MIR585-201ENST00000384887 94 ntBASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 RN7SKP100-201ENST00000411258 284 ntBASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 AL160275.3-201ENST00000423876 471 ntBASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 OR2AH1P-201ENST00000425717 928 ntBASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 AC090686.1-201ENST00000481577 749 ntBASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 AC012158.1-204ENST00000483430 465 ntBASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 RPS27AP13-201ENST00000498403 237 ntBASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 HMGB3P16-201ENST00000508037 287 ntBASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 ENPP7P9-201ENST00000514456 627 ntBASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 RNU1-6P-201ENST00000516290 144 ntBASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 AF186190.1-201ENST00000517470 480 ntBASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 AC087854.1-201ENST00000519706 414 ntBASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 AC026371.1-201ENST00000551867 419 ntBASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 CYCSP40-201ENST00000575927 294 ntBASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 MIR5699-201ENST00000578903 90 ntBASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 MIR3668-201ENST00000582138 75 ntBASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 VN1R107P-201ENST00000601784 209 ntBASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 AC006157.1-201ENST00000611750 366 ntBASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 AL732372.2-225ENST00000642124 456 ntBASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
PTCHD1Q96NR3 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
PTCHD1Q96NR3 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC4.49□□□□□ -1.69
PTCHD1Q96NR3 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
PTCHD1Q96NR3 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
PTCHD1Q96NR3 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
PTCHD1Q96NR3 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.49□□□□□ -1.69
PTCHD1Q96NR3 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
PTCHD1Q96NR3 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.49□□□□□ -1.69
PTCHD1Q96NR3 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
PTCHD1Q96NR3 AL136164.3-201ENST00000624429 3978 ntBASIC4.49□□□□□ -1.69
PTCHD1Q96NR3 RNY1P14-201ENST00000384426 108 ntBASIC4.49□□□□□ -1.69
PTCHD1Q96NR3 Y_RNA.527-201ENST00000384573 102 ntBASIC4.49□□□□□ -1.69
PTCHD1Q96NR3 MIR153-1-201ENST00000384914 90 ntBASIC4.49□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 150.5 ms