Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC022690.1-201ENST00000526681 550 ntBASIC2.12□□□□□ -2.07
CCDC88AQ3V6T2 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
CCDC88AQ3V6T2 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.12□□□□□ -2.07
CCDC88AQ3V6T2 AL109659.3-201ENST00000624985 950 ntBASIC2.12□□□□□ -2.07
CCDC88AQ3V6T2 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC2.12□□□□□ -2.07
CCDC88AQ3V6T2 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC2.12□□□□□ -2.07
CCDC88AQ3V6T2 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC2.12□□□□□ -2.07
CCDC88AQ3V6T2 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC2.12□□□□□ -2.07
CCDC88AQ3V6T2 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.12□□□□□ -2.07
CCDC88AQ3V6T2 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 RNU6-891P-201ENST00000384280 111 ntBASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 ANAPC10P1-201ENST00000395991 556 ntBASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 HMGN2P30-201ENST00000423237 256 ntBASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 HMGB1P27-201ENST00000431429 603 ntBASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 AC004062.1-201ENST00000509926 645 ntBASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 SNORA31.13-201ENST00000516624 135 ntBASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 AP004371.1-201ENST00000525240 214 ntBASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 SMILR-201ENST00000533992 553 ntTSL 4 BASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 AL355810.1-201ENST00000614629 552 ntBASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 RNU4-13P-201ENST00000364019 141 ntBASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 DEFB109C-201ENST00000382575 264 ntBASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 DEFB109B-201ENST00000382656 264 ntBASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 PRRC2CP1-201ENST00000404428 159 ntBASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 RNU6-77P-201ENST00000410554 91 ntBASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 MTND1P23-201ENST00000416931 372 ntBASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 Z96811.1-201ENST00000445880 108 ntBASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 AC017099.1-201ENST00000448261 1028 ntBASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 SNRPGP16-201ENST00000533275 226 ntBASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 ACTR3BP3-201ENST00000565577 979 ntBASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 AC103987.3-201ENST00000582071 292 ntBASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 DUXAP4-201ENST00000603046 613 ntBASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 AL645939.4-201ENST00000604495 135 ntBASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 AC018618.2-201ENST00000604770 446 ntBASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 AL009028.1-201ENST00000604895 802 ntBASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 MIR6779-201ENST00000617283 64 ntBASIC2.11□□□□□ -2.07
CCDC88AQ3V6T2 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.1□□□□□ -2.07
CCDC88AQ3V6T2 AC233981.2-201ENST00000611524 1614 ntBASIC2.1□□□□□ -2.07
CCDC88AQ3V6T2 MIR96-201ENST00000362288 78 ntBASIC2.1□□□□□ -2.07
CCDC88AQ3V6T2 RNU6-730P-201ENST00000383954 104 ntBASIC2.1□□□□□ -2.07
CCDC88AQ3V6T2 AL133384.1-201ENST00000412744 351 ntBASIC2.1□□□□□ -2.07
CCDC88AQ3V6T2 LINC01347-201ENST00000417964 355 ntBASIC2.1□□□□□ -2.07
CCDC88AQ3V6T2 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC2.1□□□□□ -2.07
CCDC88AQ3V6T2 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC2.1□□□□□ -2.07
CCDC88AQ3V6T2 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.1□□□□□ -2.07
CCDC88AQ3V6T2 AC109464.2-201ENST00000510242 943 ntBASIC2.1□□□□□ -2.07
CCDC88AQ3V6T2 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC2.1□□□□□ -2.07
CCDC88AQ3V6T2 RN7SKP40-201ENST00000517211 242 ntBASIC2.1□□□□□ -2.07
CCDC88AQ3V6T2 AC008676.3-201ENST00000521237 435 ntBASIC2.1□□□□□ -2.07
CCDC88AQ3V6T2 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC2.1□□□□□ -2.07
CCDC88AQ3V6T2 AL133507.1-201ENST00000605269 557 ntBASIC2.1□□□□□ -2.07
CCDC88AQ3V6T2 MTCO1P6-201ENST00000481192 1384 ntBASIC2.1□□□□□ -2.07
CCDC88AQ3V6T2 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
CCDC88AQ3V6T2 RNU6-1249P-201ENST00000363237 111 ntBASIC2.09□□□□□ -2.07
CCDC88AQ3V6T2 RNU6-173P-201ENST00000364215 104 ntBASIC2.09□□□□□ -2.07
CCDC88AQ3V6T2 RPS3AP9-201ENST00000417027 792 ntBASIC2.09□□□□□ -2.07
CCDC88AQ3V6T2 MTATP6P4-201ENST00000427725 675 ntBASIC2.09□□□□□ -2.07
CCDC88AQ3V6T2 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC2.09□□□□□ -2.07
CCDC88AQ3V6T2 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.09□□□□□ -2.07
CCDC88AQ3V6T2 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC2.09□□□□□ -2.07
CCDC88AQ3V6T2 AMD1P1-201ENST00000457220 922 ntBASIC2.09□□□□□ -2.07
CCDC88AQ3V6T2 RNU1-123P-201ENST00000458950 160 ntBASIC2.09□□□□□ -2.07
CCDC88AQ3V6T2 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.09□□□□□ -2.07
CCDC88AQ3V6T2 SET-203ENST00000372688 801 ntTSL 2 BASIC2.09□□□□□ -2.08
CCDC88AQ3V6T2 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC2.09□□□□□ -2.08
CCDC88AQ3V6T2 ZNF965P-201ENST00000432501 817 ntBASIC2.09□□□□□ -2.08
CCDC88AQ3V6T2 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC2.09□□□□□ -2.08
CCDC88AQ3V6T2 UBE2Q2P9-201ENST00000490086 202 ntBASIC2.09□□□□□ -2.08
CCDC88AQ3V6T2 AC090453.1-201ENST00000495560 436 ntBASIC2.09□□□□□ -2.08
CCDC88AQ3V6T2 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC2.09□□□□□ -2.08
CCDC88AQ3V6T2 SRP72-202ENST00000504757 745 ntTSL 2 BASIC2.09□□□□□ -2.08
CCDC88AQ3V6T2 HMGB1P22-201ENST00000505315 124 ntBASIC2.09□□□□□ -2.08
CCDC88AQ3V6T2 IGLV3-17-201ENST00000519099 244 ntBASIC2.09□□□□□ -2.08
CCDC88AQ3V6T2 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC2.09□□□□□ -2.08
CCDC88AQ3V6T2 AC092470.1-201ENST00000546187 132 ntBASIC2.09□□□□□ -2.08
CCDC88AQ3V6T2 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC2.09□□□□□ -2.08
CCDC88AQ3V6T2 AC010928.2-201ENST00000588017 287 ntBASIC2.09□□□□□ -2.08
CCDC88AQ3V6T2 AC113368.1-201ENST00000603736 382 ntBASIC2.09□□□□□ -2.08
CCDC88AQ3V6T2 AC022387.2-201ENST00000604050 448 ntBASIC2.09□□□□□ -2.08
CCDC88AQ3V6T2 APOOP1-201ENST00000604695 592 ntBASIC2.09□□□□□ -2.08
CCDC88AQ3V6T2 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.08□□□□□ -2.08
CCDC88AQ3V6T2 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.08□□□□□ -2.08
CCDC88AQ3V6T2 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC2.08□□□□□ -2.08
CCDC88AQ3V6T2 TAS2R15P-201ENST00000390674 928 ntBASIC2.08□□□□□ -2.08
CCDC88AQ3V6T2 RPL21P1-201ENST00000399532 476 ntBASIC2.08□□□□□ -2.08
CCDC88AQ3V6T2 FO393413.1-201ENST00000402892 195 ntBASIC2.08□□□□□ -2.08
CCDC88AQ3V6T2 AC234781.2-201ENST00000426370 994 ntBASIC2.08□□□□□ -2.08
CCDC88AQ3V6T2 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC2.08□□□□□ -2.08
CCDC88AQ3V6T2 RPS4XP11-201ENST00000446897 772 ntBASIC2.08□□□□□ -2.08
CCDC88AQ3V6T2 DPPA3P1-201ENST00000448050 469 ntBASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms