Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AL357552.1-201ENST00000445254 415 ntBASIC3.59□□□□□ -1.83
USP41Q3LFD5 AL033528.1-201ENST00000453780 140 ntBASIC3.59□□□□□ -1.83
USP41Q3LFD5 RPS3AP50-201ENST00000487064 803 ntBASIC3.59□□□□□ -1.83
USP41Q3LFD5 RN7SL504P-201ENST00000494496 287 ntBASIC3.59□□□□□ -1.83
USP41Q3LFD5 AC079140.3-201ENST00000511111 550 ntBASIC3.59□□□□□ -1.83
USP41Q3LFD5 AC026801.2-201ENST00000515352 425 ntBASIC3.59□□□□□ -1.83
USP41Q3LFD5 SCARNA13-201ENST00000516672 275 ntBASIC3.59□□□□□ -1.83
USP41Q3LFD5 RNU6-201P-201ENST00000517100 61 ntBASIC3.59□□□□□ -1.83
USP41Q3LFD5 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.59□□□□□ -1.83
USP41Q3LFD5 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.59□□□□□ -1.83
USP41Q3LFD5 AP006245.1-201ENST00000522549 120 ntBASIC3.59□□□□□ -1.83
USP41Q3LFD5 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC3.59□□□□□ -1.83
USP41Q3LFD5 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC3.59□□□□□ -1.83
USP41Q3LFD5 RPL21P5-201ENST00000554662 472 ntBASIC3.59□□□□□ -1.83
USP41Q3LFD5 AC137800.2-201ENST00000574375 120 ntBASIC3.59□□□□□ -1.83
USP41Q3LFD5 FAM60BP-201ENST00000578364 658 ntBASIC3.59□□□□□ -1.83
USP41Q3LFD5 MIR5004-201ENST00000579078 107 ntBASIC3.59□□□□□ -1.83
USP41Q3LFD5 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.59□□□□□ -1.83
USP41Q3LFD5 AC067852.3-201ENST00000589177 561 ntBASIC3.59□□□□□ -1.83
USP41Q3LFD5 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.59□□□□□ -1.83
USP41Q3LFD5 AC009268.2-201ENST00000621925 457 ntBASIC3.59□□□□□ -1.83
USP41Q3LFD5 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.59□□□□□ -1.83
USP41Q3LFD5 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.59□□□□□ -1.83
USP41Q3LFD5 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
USP41Q3LFD5 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
USP41Q3LFD5 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
USP41Q3LFD5 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
USP41Q3LFD5 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
USP41Q3LFD5 RNA5SP197-201ENST00000363357 119 ntBASIC3.58□□□□□ -1.84
USP41Q3LFD5 Y_RNA.559-201ENST00000384686 107 ntBASIC3.58□□□□□ -1.84
USP41Q3LFD5 SNORA48.5-201ENST00000391143 135 ntBASIC3.58□□□□□ -1.84
USP41Q3LFD5 HSPE1P26-201ENST00000405341 275 ntBASIC3.58□□□□□ -1.84
USP41Q3LFD5 RNU6-55P-201ENST00000411092 107 ntBASIC3.58□□□□□ -1.84
USP41Q3LFD5 RNU6-954P-201ENST00000411355 107 ntBASIC3.58□□□□□ -1.84
USP41Q3LFD5 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC3.58□□□□□ -1.84
USP41Q3LFD5 AL589823.1-201ENST00000429577 183 ntBASIC3.58□□□□□ -1.84
USP41Q3LFD5 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC3.58□□□□□ -1.84
USP41Q3LFD5 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.58□□□□□ -1.84
USP41Q3LFD5 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC3.58□□□□□ -1.84
USP41Q3LFD5 AL049734.2-201ENST00000441066 616 ntBASIC3.58□□□□□ -1.84
USP41Q3LFD5 RPL17P49-201ENST00000443728 411 ntBASIC3.58□□□□□ -1.84
USP41Q3LFD5 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.58□□□□□ -1.84
USP41Q3LFD5 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC3.58□□□□□ -1.84
USP41Q3LFD5 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC3.58□□□□□ -1.84
USP41Q3LFD5 snoU13.4-201ENST00000458916 104 ntBASIC3.58□□□□□ -1.84
USP41Q3LFD5 snoU109.1-201ENST00000459339 135 ntBASIC3.58□□□□□ -1.84
USP41Q3LFD5 RN7SL330P-201ENST00000469709 307 ntBASIC3.58□□□□□ -1.84
USP41Q3LFD5 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.58□□□□□ -1.84
USP41Q3LFD5 AC078785.3-201ENST00000476607 425 ntBASIC3.58□□□□□ -1.84
USP41Q3LFD5 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.58□□□□□ -1.84
USP41Q3LFD5 RPL23AP41-201ENST00000484754 458 ntBASIC3.58□□□□□ -1.84
USP41Q3LFD5 AC091435.1-201ENST00000505442 584 ntBASIC3.58□□□□□ -1.84
USP41Q3LFD5 ARL2BPP4-201ENST00000506854 471 ntBASIC3.58□□□□□ -1.84
USP41Q3LFD5 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.58□□□□□ -1.84
USP41Q3LFD5 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC3.58□□□□□ -1.84
USP41Q3LFD5 MTCO3P7-201ENST00000510008 774 ntBASIC3.58□□□□□ -1.84
USP41Q3LFD5 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC3.58□□□□□ -1.84
USP41Q3LFD5 SNORA70.19-201ENST00000516717 90 ntBASIC3.58□□□□□ -1.84
USP41Q3LFD5 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.58□□□□□ -1.84
USP41Q3LFD5 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.58□□□□□ -1.84
USP41Q3LFD5 AC125611.2-201ENST00000551907 647 ntBASIC3.58□□□□□ -1.84
USP41Q3LFD5 OR4T1P-201ENST00000554933 911 ntBASIC3.58□□□□□ -1.84
USP41Q3LFD5 TGIF1P1-201ENST00000558095 802 ntBASIC3.58□□□□□ -1.84
USP41Q3LFD5 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC3.58□□□□□ -1.84
USP41Q3LFD5 AL162713.1-201ENST00000604480 262 ntBASIC3.58□□□□□ -1.84
USP41Q3LFD5 AC121334.2-201ENST00000605387 271 ntBASIC3.58□□□□□ -1.84
USP41Q3LFD5 AC073657.2-201ENST00000605661 303 ntBASIC3.58□□□□□ -1.84
USP41Q3LFD5 AL139286.2-201ENST00000606838 396 ntBASIC3.58□□□□□ -1.84
USP41Q3LFD5 AL391813.2-201ENST00000609113 322 ntBASIC3.58□□□□□ -1.84
USP41Q3LFD5 HULC.1-201ENST00000612720 240 ntBASIC3.58□□□□□ -1.84
USP41Q3LFD5 AC099654.13-201ENST00000639774 207 ntBASIC3.58□□□□□ -1.84
USP41Q3LFD5 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.58□□□□□ -1.84
USP41Q3LFD5 GABPAP-201ENST00000419271 1356 ntBASIC3.58□□□□□ -1.84
USP41Q3LFD5 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.58□□□□□ -1.84
USP41Q3LFD5 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
USP41Q3LFD5 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.58□□□□□ -1.84
USP41Q3LFD5 AC073073.2-201ENST00000609827 2578 ntBASIC3.57□□□□□ -1.84
USP41Q3LFD5 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.57□□□□□ -1.84
USP41Q3LFD5 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
USP41Q3LFD5 RNU6-623P-201ENST00000363143 105 ntBASIC3.57□□□□□ -1.84
USP41Q3LFD5 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.57□□□□□ -1.84
USP41Q3LFD5 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.57□□□□□ -1.84
USP41Q3LFD5 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.84
USP41Q3LFD5 SNORA75-201ENST00000384158 137 ntBASIC3.57□□□□□ -1.84
USP41Q3LFD5 RNU6-297P-201ENST00000384636 107 ntBASIC3.57□□□□□ -1.84
USP41Q3LFD5 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.57□□□□□ -1.84
USP41Q3LFD5 DEFB108C-201ENST00000400154 252 ntBASIC3.57□□□□□ -1.84
USP41Q3LFD5 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.57□□□□□ -1.84
USP41Q3LFD5 AL357075.1-201ENST00000404107 726 ntBASIC3.57□□□□□ -1.84
USP41Q3LFD5 RNU4-47P-201ENST00000410876 114 ntBASIC3.57□□□□□ -1.84
USP41Q3LFD5 RNA5SP31-201ENST00000411144 127 ntBASIC3.57□□□□□ -1.84
USP41Q3LFD5 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
USP41Q3LFD5 Z99755.1-201ENST00000414048 380 ntBASIC3.57□□□□□ -1.84
USP41Q3LFD5 AL353777.1-201ENST00000425552 326 ntBASIC3.57□□□□□ -1.84
USP41Q3LFD5 MTCO1P39-201ENST00000426148 480 ntBASIC3.57□□□□□ -1.84
USP41Q3LFD5 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC3.57□□□□□ -1.84
USP41Q3LFD5 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.57□□□□□ -1.84
USP41Q3LFD5 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.57□□□□□ -1.84
USP41Q3LFD5 SNORD42A-201ENST00000459584 64 ntBASIC3.57□□□□□ -1.84
USP41Q3LFD5 LARP1BP2-201ENST00000486594 519 ntBASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms