Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC024082.2-201ENST00000434771 238 ntBASIC3.54□□□□□ -1.84
COL28A1Q2UY09 AC009961.2-201ENST00000435771 251 ntBASIC3.54□□□□□ -1.84
COL28A1Q2UY09 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC3.54□□□□□ -1.84
COL28A1Q2UY09 RPL26P6-201ENST00000440913 438 ntBASIC3.54□□□□□ -1.84
COL28A1Q2UY09 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.54□□□□□ -1.84
COL28A1Q2UY09 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC3.54□□□□□ -1.84
COL28A1Q2UY09 AL671855.1-201ENST00000446875 1203 ntBASIC3.54□□□□□ -1.84
COL28A1Q2UY09 ANP32BP2-201ENST00000454525 545 ntBASIC3.54□□□□□ -1.84
COL28A1Q2UY09 AC004801.2-202ENST00000463559 283 ntBASIC3.54□□□□□ -1.84
COL28A1Q2UY09 MTCO2P29-201ENST00000465212 189 ntBASIC3.54□□□□□ -1.84
COL28A1Q2UY09 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC3.54□□□□□ -1.84
COL28A1Q2UY09 AC020893.1-201ENST00000502452 580 ntBASIC3.54□□□□□ -1.84
COL28A1Q2UY09 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
COL28A1Q2UY09 VN1R104P-201ENST00000505115 1009 ntBASIC3.54□□□□□ -1.84
COL28A1Q2UY09 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC3.54□□□□□ -1.84
COL28A1Q2UY09 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC3.54□□□□□ -1.84
COL28A1Q2UY09 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.54□□□□□ -1.84
COL28A1Q2UY09 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC3.54□□□□□ -1.84
COL28A1Q2UY09 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC3.54□□□□□ -1.84
COL28A1Q2UY09 Y_RNA.655-201ENST00000515919 96 ntBASIC3.54□□□□□ -1.84
COL28A1Q2UY09 AC100870.1-201ENST00000522035 505 ntBASIC3.54□□□□□ -1.84
COL28A1Q2UY09 AC107934.1-201ENST00000522215 217 ntBASIC3.54□□□□□ -1.84
COL28A1Q2UY09 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
COL28A1Q2UY09 DEFB108A-201ENST00000530110 222 ntBASIC3.54□□□□□ -1.84
COL28A1Q2UY09 MED28P6-201ENST00000558776 231 ntBASIC3.54□□□□□ -1.84
COL28A1Q2UY09 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC3.54□□□□□ -1.84
COL28A1Q2UY09 NRBF2P1-201ENST00000587407 859 ntBASIC3.54□□□□□ -1.84
COL28A1Q2UY09 AC006116.10-201ENST00000591836 581 ntBASIC3.54□□□□□ -1.84
COL28A1Q2UY09 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.54□□□□□ -1.84
COL28A1Q2UY09 AC090578.1-201ENST00000604955 591 ntBASIC3.54□□□□□ -1.84
COL28A1Q2UY09 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC3.54□□□□□ -1.84
COL28A1Q2UY09 AL391813.2-201ENST00000609113 322 ntBASIC3.54□□□□□ -1.84
COL28A1Q2UY09 RNVU1-4-201ENST00000612985 164 ntBASIC3.54□□□□□ -1.84
COL28A1Q2UY09 TUG1_2.1-201ENST00000614234 87 ntBASIC3.54□□□□□ -1.84
COL28A1Q2UY09 AC008121.2-201ENST00000614647 523 ntBASIC3.54□□□□□ -1.84
COL28A1Q2UY09 AC091953.2-201ENST00000623979 160 ntBASIC3.54□□□□□ -1.84
COL28A1Q2UY09 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.54□□□□□ -1.84
COL28A1Q2UY09 PISRT1-201ENST00000626175 531 ntBASIC3.54□□□□□ -1.84
COL28A1Q2UY09 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL28A1Q2UY09 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
COL28A1Q2UY09 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.54□□□□□ -1.84
COL28A1Q2UY09 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL28A1Q2UY09 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
COL28A1Q2UY09 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.53□□□□□ -1.84
COL28A1Q2UY09 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL28A1Q2UY09 SDAD1P2-201ENST00000441308 2028 ntBASIC3.53□□□□□ -1.84
COL28A1Q2UY09 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL28A1Q2UY09 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
COL28A1Q2UY09 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
COL28A1Q2UY09 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.53□□□□□ -1.84
COL28A1Q2UY09 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.53□□□□□ -1.84
COL28A1Q2UY09 DEFB108F-201ENST00000344638 222 ntBASIC3.53□□□□□ -1.84
COL28A1Q2UY09 Y_RNA.559-201ENST00000384686 107 ntBASIC3.53□□□□□ -1.84
COL28A1Q2UY09 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.53□□□□□ -1.84
COL28A1Q2UY09 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.53□□□□□ -1.84
COL28A1Q2UY09 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC3.53□□□□□ -1.84
COL28A1Q2UY09 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC3.53□□□□□ -1.84
COL28A1Q2UY09 RPS24P1-201ENST00000438550 371 ntBASIC3.53□□□□□ -1.84
COL28A1Q2UY09 AC093156.1-201ENST00000440382 670 ntBASIC3.53□□□□□ -1.84
COL28A1Q2UY09 RABEPKP1-201ENST00000440529 1026 ntBASIC3.53□□□□□ -1.84
COL28A1Q2UY09 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC3.53□□□□□ -1.84
COL28A1Q2UY09 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.53□□□□□ -1.84
COL28A1Q2UY09 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC3.53□□□□□ -1.84
COL28A1Q2UY09 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.53□□□□□ -1.84
COL28A1Q2UY09 RNA5SP468-201ENST00000516782 93 ntBASIC3.53□□□□□ -1.84
COL28A1Q2UY09 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC3.53□□□□□ -1.84
COL28A1Q2UY09 AP003181.2-201ENST00000528941 181 ntBASIC3.53□□□□□ -1.84
COL28A1Q2UY09 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC3.53□□□□□ -1.84
COL28A1Q2UY09 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.53□□□□□ -1.84
COL28A1Q2UY09 AC099489.2-201ENST00000574976 260 ntBASIC3.53□□□□□ -1.84
COL28A1Q2UY09 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.53□□□□□ -1.84
COL28A1Q2UY09 AL606834.2-201ENST00000602954 668 ntBASIC3.53□□□□□ -1.84
COL28A1Q2UY09 BNIP3P10-201ENST00000605360 577 ntBASIC3.53□□□□□ -1.84
COL28A1Q2UY09 AC004067.1-201ENST00000608733 700 ntBASIC3.53□□□□□ -1.84
COL28A1Q2UY09 AC103710.1-201ENST00000610003 901 ntBASIC3.53□□□□□ -1.84
COL28A1Q2UY09 AC013412.1-201ENST00000610687 192 ntBASIC3.53□□□□□ -1.84
COL28A1Q2UY09 AC138932.5-201ENST00000617759 563 ntBASIC3.53□□□□□ -1.84
COL28A1Q2UY09 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.53□□□□□ -1.84
COL28A1Q2UY09 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
COL28A1Q2UY09 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL28A1Q2UY09 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL28A1Q2UY09 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL28A1Q2UY09 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL28A1Q2UY09 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
COL28A1Q2UY09 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.53□□□□□ -1.85
COL28A1Q2UY09 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.52□□□□□ -1.85
COL28A1Q2UY09 MFSD8-236ENST00000641509 4050 ntBASIC3.52□□□□□ -1.85
COL28A1Q2UY09 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
COL28A1Q2UY09 AC092326.2-201ENST00000624772 1561 ntBASIC3.52□□□□□ -1.85
COL28A1Q2UY09 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
COL28A1Q2UY09 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
COL28A1Q2UY09 U8.3-201ENST00000363321 132 ntBASIC3.52□□□□□ -1.85
COL28A1Q2UY09 RNU4-1-201ENST00000363925 141 ntBASIC3.52□□□□□ -1.85
COL28A1Q2UY09 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
COL28A1Q2UY09 MIR199A2-201ENST00000385289 110 ntBASIC3.52□□□□□ -1.85
COL28A1Q2UY09 MRPL42P2-201ENST00000403169 426 ntBASIC3.52□□□□□ -1.85
COL28A1Q2UY09 RNU2-62P-201ENST00000410868 191 ntBASIC3.52□□□□□ -1.85
COL28A1Q2UY09 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC3.52□□□□□ -1.85
COL28A1Q2UY09 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
COL28A1Q2UY09 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms