Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 SAR1AP4-201ENST00000429225 591 ntBASIC3.62□□□□□ -1.83
HOXA4Q00056 AC011998.1-201ENST00000433403 117 ntBASIC3.62□□□□□ -1.83
HOXA4Q00056 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXA4Q00056 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXA4Q00056 MTCYBP6-201ENST00000441810 138 ntBASIC3.62□□□□□ -1.83
HOXA4Q00056 SCARNA18-201ENST00000459004 134 ntBASIC3.62□□□□□ -1.83
HOXA4Q00056 AC116533.1-201ENST00000459748 321 ntBASIC3.62□□□□□ -1.83
HOXA4Q00056 AC004801.2-202ENST00000463559 283 ntBASIC3.62□□□□□ -1.83
HOXA4Q00056 RN7SL41P-201ENST00000476144 297 ntBASIC3.62□□□□□ -1.83
HOXA4Q00056 RN7SL481P-201ENST00000477764 299 ntBASIC3.62□□□□□ -1.83
HOXA4Q00056 RN7SL810P-201ENST00000493031 276 ntBASIC3.62□□□□□ -1.83
HOXA4Q00056 RN7SL691P-201ENST00000494487 301 ntBASIC3.62□□□□□ -1.83
HOXA4Q00056 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXA4Q00056 AC093840.1-201ENST00000511599 336 ntBASIC3.62□□□□□ -1.83
HOXA4Q00056 AC021146.3-201ENST00000511911 260 ntBASIC3.62□□□□□ -1.83
HOXA4Q00056 RNU6-864P-201ENST00000516256 108 ntBASIC3.62□□□□□ -1.83
HOXA4Q00056 RNA5SP49-201ENST00000516450 115 ntBASIC3.62□□□□□ -1.83
HOXA4Q00056 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXA4Q00056 AP006587.4-201ENST00000526053 529 ntBASIC3.62□□□□□ -1.83
HOXA4Q00056 AP005597.4-201ENST00000526762 229 ntBASIC3.62□□□□□ -1.83
HOXA4Q00056 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC3.62□□□□□ -1.83
HOXA4Q00056 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC3.62□□□□□ -1.83
HOXA4Q00056 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXA4Q00056 BNIP3P5-201ENST00000562290 498 ntBASIC3.62□□□□□ -1.83
HOXA4Q00056 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXA4Q00056 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXA4Q00056 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.62□□□□□ -1.83
HOXA4Q00056 AC022432.1-201ENST00000595739 310 ntBASIC3.62□□□□□ -1.83
HOXA4Q00056 AC078795.3-201ENST00000602913 472 ntBASIC3.62□□□□□ -1.83
HOXA4Q00056 AC008638.3-201ENST00000603341 463 ntBASIC3.62□□□□□ -1.83
HOXA4Q00056 AL670379.4-201ENST00000605279 254 ntBASIC3.62□□□□□ -1.83
HOXA4Q00056 AC091979.2-201ENST00000607514 214 ntBASIC3.62□□□□□ -1.83
HOXA4Q00056 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HOXA4Q00056 AL138721.1-201ENST00000616756 179 ntBASIC3.62□□□□□ -1.83
HOXA4Q00056 uc_338.13-201ENST00000618243 179 ntBASIC3.62□□□□□ -1.83
HOXA4Q00056 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
HOXA4Q00056 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HOXA4Q00056 AC116667.1-201ENST00000604855 2072 ntBASIC3.62□□□□□ -1.83
HOXA4Q00056 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HOXA4Q00056 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXA4Q00056 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HOXA4Q00056 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HOXA4Q00056 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC3.62□□□□□ -1.83
HOXA4Q00056 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.62□□□□□ -1.83
HOXA4Q00056 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA4Q00056 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA4Q00056 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA4Q00056 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC3.61□□□□□ -1.83
HOXA4Q00056 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC3.61□□□□□ -1.83
HOXA4Q00056 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA4Q00056 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC3.61□□□□□ -1.83
HOXA4Q00056 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC3.61□□□□□ -1.83
HOXA4Q00056 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC3.61□□□□□ -1.83
HOXA4Q00056 AP001273.1-201ENST00000624493 3152 ntBASIC3.61□□□□□ -1.83
HOXA4Q00056 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
HOXA4Q00056 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA4Q00056 Y_RNA.387-201ENST00000383918 102 ntBASIC3.61□□□□□ -1.83
HOXA4Q00056 Y_RNA.431-201ENST00000384086 102 ntBASIC3.61□□□□□ -1.83
HOXA4Q00056 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
HOXA4Q00056 VDAC1P9-201ENST00000412766 841 ntBASIC3.61□□□□□ -1.83
HOXA4Q00056 AC011933.1-201ENST00000413334 321 ntBASIC3.61□□□□□ -1.83
HOXA4Q00056 AL157831.1-201ENST00000426134 473 ntBASIC3.61□□□□□ -1.83
HOXA4Q00056 FABP5P13-201ENST00000452144 328 ntBASIC3.61□□□□□ -1.83
HOXA4Q00056 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXA4Q00056 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXA4Q00056 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXA4Q00056 RPL21P8-201ENST00000465083 535 ntBASIC3.61□□□□□ -1.83
HOXA4Q00056 AC109327.1-201ENST00000471666 403 ntBASIC3.61□□□□□ -1.83
HOXA4Q00056 AF213884.1-201ENST00000488102 463 ntBASIC3.61□□□□□ -1.83
HOXA4Q00056 Y_RNA.654-201ENST00000497848 106 ntBASIC3.61□□□□□ -1.83
HOXA4Q00056 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXA4Q00056 RN7SKP13-201ENST00000515933 244 ntBASIC3.61□□□□□ -1.83
HOXA4Q00056 RNU6-123P-201ENST00000516163 102 ntBASIC3.61□□□□□ -1.83
HOXA4Q00056 RNU6-1088P-201ENST00000516850 104 ntBASIC3.61□□□□□ -1.83
HOXA4Q00056 RNU6-273P-201ENST00000516937 96 ntBASIC3.61□□□□□ -1.83
HOXA4Q00056 RNU6-685P-201ENST00000517088 95 ntBASIC3.61□□□□□ -1.83
HOXA4Q00056 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXA4Q00056 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA4Q00056 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA4Q00056 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA4Q00056 AL121603.1-201ENST00000553815 142 ntBASIC3.61□□□□□ -1.83
HOXA4Q00056 TVP23BP1-201ENST00000557500 617 ntBASIC3.61□□□□□ -1.83
HOXA4Q00056 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXA4Q00056 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXA4Q00056 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXA4Q00056 POLR3GP2-201ENST00000588366 668 ntBASIC3.61□□□□□ -1.83
HOXA4Q00056 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXA4Q00056 HMGB2P1-201ENST00000591146 634 ntBASIC3.61□□□□□ -1.83
HOXA4Q00056 AL158032.1-201ENST00000605401 106 ntBASIC3.61□□□□□ -1.83
HOXA4Q00056 5S_rRNA.16-201ENST00000612928 119 ntBASIC3.61□□□□□ -1.83
HOXA4Q00056 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA4Q00056 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA4Q00056 AC006065.5-201ENST00000623427 349 ntBASIC3.61□□□□□ -1.83
HOXA4Q00056 AC140479.6-201ENST00000633535 357 ntBASIC3.61□□□□□ -1.83
HOXA4Q00056 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
HOXA4Q00056 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA4Q00056 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA4Q00056 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA4Q00056 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA4Q00056 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 76.4 ms