Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
CCDC9Q9Y3X0 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC9Q9Y3X0 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC9Q9Y3X0 ZNF807-201ENST00000328088 1707 ntBASIC5.6□□□□□ -1.51
CCDC9Q9Y3X0 AC002546.1-201ENST00000588041 2504 ntBASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 AL022393.1-201ENST00000625142 1677 ntBASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 CUL1P1-201ENST00000509510 2425 ntBASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 AL161912.2-201ENST00000565707 3007 ntBASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 RNU4-48P-201ENST00000365559 182 ntBASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 MIR218-2-201ENST00000385006 110 ntBASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 MIR454-201ENST00000390180 115 ntBASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 Z85995.1-201ENST00000415547 335 ntBASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 MTND4P25-201ENST00000441039 533 ntBASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 AC087588.1-201ENST00000462203 316 ntBASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 RPS29P19-201ENST00000479709 171 ntBASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 AC108078.2-201ENST00000510750 236 ntBASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 NDUFB4P9-201ENST00000511646 388 ntBASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 SNORD27.1-201ENST00000516319 72 ntBASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 RNU1-95P-201ENST00000516357 160 ntBASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 RNU1-128P-201ENST00000516704 160 ntBASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 TPRKBP2-201ENST00000565969 475 ntBASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 AC174048.1-201ENST00000603389 144 ntBASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 AL160290.3-201ENST00000604869 165 ntBASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 AC017083.3-201ENST00000609955 700 ntBASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 AC034102.8-201ENST00000615146 484 ntBASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 U6.114-201ENST00000636407 96 ntBASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC9Q9Y3X0 MTND5P17-201ENST00000418405 1603 ntBASIC5.59□□□□□ -1.52
CCDC9Q9Y3X0 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
CCDC9Q9Y3X0 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 ZNF680P1-201ENST00000436625 1469 ntBASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 RNA5SP72-201ENST00000364442 117 ntBASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 Y_RNA.409-201ENST00000383990 98 ntBASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 SNORA5A-201ENST00000384111 134 ntBASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 Y_RNA.481-201ENST00000384373 102 ntBASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 CALM2P3-201ENST00000400429 449 ntBASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 HSPE1P8-201ENST00000406997 288 ntBASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 RPL23AP25-201ENST00000430973 463 ntBASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 AC092573.2-201ENST00000434546 243 ntBASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 RPS15AP9-201ENST00000439856 381 ntBASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 BNIP3P2-201ENST00000441221 577 ntBASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 PRDX3P3-201ENST00000447765 522 ntBASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 AC027673.1-201ENST00000456245 405 ntBASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 RNA5SP310-201ENST00000459084 116 ntBASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 AC009646.1-201ENST00000510455 318 ntBASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 OR5G4P-201ENST00000525251 760 ntBASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 AP003465.2-201ENST00000602571 373 ntBASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 AC126118.1-201ENST00000607744 628 ntBASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 AL442067.2-201ENST00000614033 363 ntBASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 AC025034.2-201ENST00000623264 286 ntBASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 AC093648.1-201ENST00000623546 606 ntBASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 AC007785.2-201ENST00000598627 1916 ntBASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC9Q9Y3X0 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
CCDC9Q9Y3X0 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC9Q9Y3X0 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
CCDC9Q9Y3X0 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
CCDC9Q9Y3X0 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC9Q9Y3X0 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC9Q9Y3X0 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC9Q9Y3X0 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
CCDC9Q9Y3X0 RNU6-288P-201ENST00000363690 104 ntBASIC5.57□□□□□ -1.52
CCDC9Q9Y3X0 SNORA62.1-201ENST00000364287 154 ntBASIC5.57□□□□□ -1.52
CCDC9Q9Y3X0 SNORA24.1-201ENST00000384401 135 ntBASIC5.57□□□□□ -1.52
CCDC9Q9Y3X0 RNU6-606P-201ENST00000384721 111 ntBASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms