Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AP002826.1-201ENST00000608835 315 ntBASIC4.47□□□□□ -1.69
TRIM39Q9HCM9 AL121757.2-201ENST00000611223 313 ntBASIC4.47□□□□□ -1.69
TRIM39Q9HCM9 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC4.47□□□□□ -1.69
TRIM39Q9HCM9 AC005858.4-201ENST00000623191 700 ntBASIC4.47□□□□□ -1.69
TRIM39Q9HCM9 AC112200.1-201ENST00000625015 234 ntBASIC4.47□□□□□ -1.69
TRIM39Q9HCM9 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC4.47□□□□□ -1.69
TRIM39Q9HCM9 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC4.47□□□□□ -1.69
TRIM39Q9HCM9 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.47□□□□□ -1.69
TRIM39Q9HCM9 AL157700.1-201ENST00000561973 1432 ntBASIC4.46□□□□□ -1.69
TRIM39Q9HCM9 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
TRIM39Q9HCM9 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
TRIM39Q9HCM9 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 RNU6-522P-201ENST00000364497 107 ntBASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 RNU4-76P-201ENST00000364509 141 ntBASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 Y_RNA.535-201ENST00000384612 99 ntBASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 SNORD96B-201ENST00000386148 79 ntBASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 AL356967.1-201ENST00000406305 431 ntBASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 RN7SKP216-201ENST00000411050 312 ntBASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 RPS20P15-201ENST00000412792 311 ntBASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 FAR2P2-201ENST00000413041 594 ntBASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 USP9YP20-201ENST00000419224 558 ntBASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 HSPE1P1-201ENST00000421494 318 ntBASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 Z74021.1-201ENST00000423610 407 ntBASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 FAR2P4-202ENST00000425399 584 ntBASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 USP9YP7-201ENST00000436723 430 ntBASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 MRPL50P4-201ENST00000446432 475 ntBASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 AC012671.1-201ENST00000451912 203 ntBASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 USP9YP32-201ENST00000452432 430 ntBASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 RNU6-329P-201ENST00000459618 107 ntBASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 AC103851.1-201ENST00000506833 274 ntBASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 MEPE-206ENST00000511670 550 ntTSL 4 BASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 SNORA19.2-201ENST00000516013 114 ntBASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 AC002545.1-201ENST00000592511 181 ntBASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 AC009570.1-201ENST00000609599 745 ntBASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 AL132765.2-201ENST00000610812 351 ntBASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
TRIM39Q9HCM9 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 AC121333.1-201ENST00000567488 2709 ntBASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 RNU6-288P-201ENST00000363690 104 ntBASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 U3.12-201ENST00000364498 214 ntBASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 SNORA51.2-201ENST00000364595 132 ntBASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 Y_RNA.509-201ENST00000384506 99 ntBASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 CISD1P1-201ENST00000393907 327 ntBASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 AL122016.1-201ENST00000403365 367 ntBASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 HSPE1P8-201ENST00000406997 288 ntBASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 AC009237.10-201ENST00000414112 510 ntBASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 AL356387.2-201ENST00000422272 243 ntBASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 EIF4EP1-201ENST00000422311 642 ntBASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 RPL21P91-201ENST00000429231 479 ntBASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 AL356867.1-201ENST00000429623 299 ntBASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 PRDX3P3-201ENST00000447765 522 ntBASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 AC133473.1-201ENST00000455173 299 ntBASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 RPL5P30-201ENST00000465511 891 ntBASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 AL049874.1-201ENST00000489560 388 ntBASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 DEFB109F-201ENST00000491870 277 ntBASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 AC023141.12-201ENST00000512399 199 ntBASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 RNU6-927P-201ENST00000516199 100 ntBASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 RNU6-1038P-201ENST00000516516 104 ntBASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 AP000763.2-201ENST00000540641 163 ntBASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC4.45□□□□□ -1.7
TRIM39Q9HCM9 AC022968.1-201ENST00000567372 442 ntBASIC4.45□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 97.1 ms