Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AL049737.1-201ENST00000413920 1403 ntBASIC2.04□□□□□ -2.08
USP54Q70EL1 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
USP54Q70EL1 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC2.04□□□□□ -2.08
USP54Q70EL1 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC2.04□□□□□ -2.08
USP54Q70EL1 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC2.04□□□□□ -2.08
USP54Q70EL1 RPS29P20-201ENST00000489592 171 ntBASIC2.04□□□□□ -2.08
USP54Q70EL1 RPS15AP36-201ENST00000492022 382 ntBASIC2.04□□□□□ -2.08
USP54Q70EL1 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC2.04□□□□□ -2.08
USP54Q70EL1 RNU6-1308P-201ENST00000516817 103 ntBASIC2.04□□□□□ -2.08
USP54Q70EL1 RNU6-1073P-201ENST00000517182 106 ntBASIC2.04□□□□□ -2.08
USP54Q70EL1 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC2.04□□□□□ -2.08
USP54Q70EL1 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.04□□□□□ -2.08
USP54Q70EL1 MIR4452-201ENST00000583004 71 ntBASIC2.04□□□□□ -2.08
USP54Q70EL1 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC2.04□□□□□ -2.08
USP54Q70EL1 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC2.04□□□□□ -2.08
USP54Q70EL1 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
USP54Q70EL1 AL136520.1-201ENST00000600311 1322 ntBASIC2.04□□□□□ -2.08
USP54Q70EL1 AC073264.1-201ENST00000411508 416 ntBASIC2.03□□□□□ -2.08
USP54Q70EL1 RPL26P37-201ENST00000411983 438 ntBASIC2.03□□□□□ -2.08
USP54Q70EL1 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC2.03□□□□□ -2.08
USP54Q70EL1 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC2.03□□□□□ -2.08
USP54Q70EL1 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC2.03□□□□□ -2.08
USP54Q70EL1 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC2.03□□□□□ -2.08
USP54Q70EL1 snoU13.7-201ENST00000459220 104 ntBASIC2.03□□□□□ -2.08
USP54Q70EL1 MTCO3P35-201ENST00000485582 781 ntBASIC2.03□□□□□ -2.08
USP54Q70EL1 AC010625.1-201ENST00000511296 403 ntBASIC2.03□□□□□ -2.08
USP54Q70EL1 SNORA31.24-201ENST00000517232 57 ntBASIC2.03□□□□□ -2.08
USP54Q70EL1 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC2.03□□□□□ -2.08
USP54Q70EL1 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC2.03□□□□□ -2.08
USP54Q70EL1 SNORD53B-201ENST00000577887 78 ntBASIC2.03□□□□□ -2.08
USP54Q70EL1 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC2.03□□□□□ -2.08
USP54Q70EL1 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC2.03□□□□□ -2.08
USP54Q70EL1 MIR96-201ENST00000362288 78 ntBASIC2.02□□□□□ -2.09
USP54Q70EL1 SYPL1P1-201ENST00000473622 768 ntBASIC2.02□□□□□ -2.09
USP54Q70EL1 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
USP54Q70EL1 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC2.02□□□□□ -2.09
USP54Q70EL1 MIR5694-201ENST00000581190 76 ntBASIC2.02□□□□□ -2.09
USP54Q70EL1 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC2.02□□□□□ -2.09
USP54Q70EL1 AL009028.1-201ENST00000604895 802 ntBASIC2.02□□□□□ -2.09
USP54Q70EL1 LINC00216-201ENST00000623548 1126 ntBASIC2.02□□□□□ -2.09
USP54Q70EL1 TEX41-202ENST00000414256 604 ntTSL 5 BASIC2.02□□□□□ -2.09
USP54Q70EL1 TRAPPC2P4-201ENST00000421750 331 ntBASIC2.02□□□□□ -2.09
USP54Q70EL1 NDUFA5P10-201ENST00000432147 357 ntBASIC2.02□□□□□ -2.09
USP54Q70EL1 AC096992.1-201ENST00000459808 709 ntBASIC2.02□□□□□ -2.09
USP54Q70EL1 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC2.02□□□□□ -2.09
USP54Q70EL1 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC2.02□□□□□ -2.09
USP54Q70EL1 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC2.02□□□□□ -2.09
USP54Q70EL1 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.02□□□□□ -2.09
USP54Q70EL1 SNORD84-203ENST00000584275 78 ntBASIC2.02□□□□□ -2.09
USP54Q70EL1 MIR6779-201ENST00000617283 64 ntBASIC2.02□□□□□ -2.09
USP54Q70EL1 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.02□□□□□ -2.09
USP54Q70EL1 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.02□□□□□ -2.09
USP54Q70EL1 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
USP54Q70EL1 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
USP54Q70EL1 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC2.01□□□□□ -2.09
USP54Q70EL1 RNU6-1027P-201ENST00000383998 107 ntBASIC2.01□□□□□ -2.09
USP54Q70EL1 AL591034.1-201ENST00000407447 340 ntBASIC2.01□□□□□ -2.09
USP54Q70EL1 Z85995.1-201ENST00000415547 335 ntBASIC2.01□□□□□ -2.09
USP54Q70EL1 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC2.01□□□□□ -2.09
USP54Q70EL1 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.01□□□□□ -2.09
USP54Q70EL1 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.01□□□□□ -2.09
USP54Q70EL1 SRP72-202ENST00000504757 745 ntTSL 2 BASIC2.01□□□□□ -2.09
USP54Q70EL1 AC008015.1-201ENST00000555505 465 ntBASIC2.01□□□□□ -2.09
USP54Q70EL1 AL049870.4-201ENST00000555741 486 ntBASIC2.01□□□□□ -2.09
USP54Q70EL1 AC068831.7-201ENST00000616954 363 ntBASIC2.01□□□□□ -2.09
USP54Q70EL1 AL359740.1-201ENST00000624340 592 ntBASIC2.01□□□□□ -2.09
USP54Q70EL1 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.01□□□□□ -2.09
USP54Q70EL1 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2□□□□□ -2.09
USP54Q70EL1 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2□□□□□ -2.09
USP54Q70EL1 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC2□□□□□ -2.09
USP54Q70EL1 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
USP54Q70EL1 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
USP54Q70EL1 RNU6-799P-201ENST00000363567 107 ntBASIC2□□□□□ -2.09
USP54Q70EL1 RNU1-42P-201ENST00000364033 160 ntBASIC2□□□□□ -2.09
USP54Q70EL1 RNU6-335P-201ENST00000364563 113 ntBASIC2□□□□□ -2.09
USP54Q70EL1 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC2□□□□□ -2.09
USP54Q70EL1 RPL21P1-201ENST00000399532 476 ntBASIC2□□□□□ -2.09
USP54Q70EL1 RPS15AP40-201ENST00000419621 391 ntBASIC2□□□□□ -2.09
USP54Q70EL1 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC2□□□□□ -2.09
USP54Q70EL1 RGS5-217ENST00000451759 835 ntTSL 3 BASIC2□□□□□ -2.09
USP54Q70EL1 AC111193.1-201ENST00000504097 155 ntBASIC2□□□□□ -2.09
USP54Q70EL1 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC2□□□□□ -2.09
USP54Q70EL1 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC2□□□□□ -2.09
USP54Q70EL1 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC2□□□□□ -2.09
USP54Q70EL1 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC2□□□□□ -2.09
USP54Q70EL1 AL157834.3-201ENST00000615543 103 ntBASIC2□□□□□ -2.09
USP54Q70EL1 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC2□□□□□ -2.09
USP54Q70EL1 AL158801.5-201ENST00000623123 465 ntBASIC2□□□□□ -2.09
USP54Q70EL1 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
USP54Q70EL1 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC1.99□□□□□ -2.09
USP54Q70EL1 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
USP54Q70EL1 RPL23AP29-201ENST00000397284 453 ntBASIC1.99□□□□□ -2.09
USP54Q70EL1 AL357078.2-201ENST00000416486 427 ntBASIC1.99□□□□□ -2.09
USP54Q70EL1 AL358075.3-201ENST00000426289 226 ntBASIC1.99□□□□□ -2.09
USP54Q70EL1 MTATP6P4-201ENST00000427725 675 ntBASIC1.99□□□□□ -2.09
USP54Q70EL1 RPS26P56-201ENST00000444468 240 ntBASIC1.99□□□□□ -2.09
USP54Q70EL1 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC1.99□□□□□ -2.09
USP54Q70EL1 AC004062.1-201ENST00000509926 645 ntBASIC1.99□□□□□ -2.09
USP54Q70EL1 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC1.99□□□□□ -2.09
USP54Q70EL1 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC1.99□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms