Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 MIR1290-201ENST00000408735 78 ntBASIC2.94□□□□□ -1.94
SDC3O75056 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC2.94□□□□□ -1.94
SDC3O75056 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC2.94□□□□□ -1.94
SDC3O75056 AC244505.4-201ENST00000434905 287 ntBASIC2.94□□□□□ -1.94
SDC3O75056 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC2.94□□□□□ -1.94
SDC3O75056 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC2.94□□□□□ -1.94
SDC3O75056 RPL26P6-201ENST00000440913 438 ntBASIC2.94□□□□□ -1.94
SDC3O75056 SSXP5-201ENST00000443473 287 ntBASIC2.94□□□□□ -1.94
SDC3O75056 AC093392.2-201ENST00000450682 337 ntBASIC2.94□□□□□ -1.94
SDC3O75056 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC2.94□□□□□ -1.94
SDC3O75056 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC2.94□□□□□ -1.94
SDC3O75056 RPS26P21-201ENST00000475397 348 ntBASIC2.94□□□□□ -1.94
SDC3O75056 KC877373.1-201ENST00000479066 408 ntBASIC2.94□□□□□ -1.94
SDC3O75056 MTND2P14-201ENST00000482139 351 ntBASIC2.94□□□□□ -1.94
SDC3O75056 AHI1-208ENST00000488690 712 ntTSL 5 BASIC2.94□□□□□ -1.94
SDC3O75056 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC2.94□□□□□ -1.94
SDC3O75056 AC118465.1-201ENST00000513820 1271 ntBASIC2.94□□□□□ -1.94
SDC3O75056 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC2.94□□□□□ -1.94
SDC3O75056 RNU6-528P-201ENST00000516926 100 ntBASIC2.94□□□□□ -1.94
SDC3O75056 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC2.94□□□□□ -1.94
SDC3O75056 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC2.94□□□□□ -1.94
SDC3O75056 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC2.94□□□□□ -1.94
SDC3O75056 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC2.94□□□□□ -1.94
SDC3O75056 DNAJC8P1-201ENST00000554535 372 ntBASIC2.94□□□□□ -1.94
SDC3O75056 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC2.94□□□□□ -1.94
SDC3O75056 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC2.94□□□□□ -1.94
SDC3O75056 AC009097.3-201ENST00000563557 1018 ntBASIC2.94□□□□□ -1.94
SDC3O75056 AC034268.2-201ENST00000571784 482 ntBASIC2.94□□□□□ -1.94
SDC3O75056 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC2.94□□□□□ -1.94
SDC3O75056 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC2.94□□□□□ -1.94
SDC3O75056 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.94□□□□□ -1.94
SDC3O75056 AC234772.3-201ENST00000602277 528 ntBASIC2.94□□□□□ -1.94
SDC3O75056 AC011451.2-201ENST00000604303 598 ntBASIC2.94□□□□□ -1.94
SDC3O75056 OR2AS2P-201ENST00000606902 342 ntBASIC2.94□□□□□ -1.94
SDC3O75056 MIR6130-201ENST00000619419 109 ntBASIC2.94□□□□□ -1.94
SDC3O75056 AC027309.3-201ENST00000623419 351 ntBASIC2.94□□□□□ -1.94
SDC3O75056 AP003122.6-201ENST00000623831 495 ntBASIC2.94□□□□□ -1.94
SDC3O75056 AC012321.1-201ENST00000561622 1588 ntBASIC2.94□□□□□ -1.94
SDC3O75056 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
SDC3O75056 AC005832.2-201ENST00000538921 1430 ntBASIC2.93□□□□□ -1.94
SDC3O75056 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC2.93□□□□□ -1.94
SDC3O75056 AC087359.1-201ENST00000508335 1740 ntBASIC2.93□□□□□ -1.94
SDC3O75056 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC2.93□□□□□ -1.94
SDC3O75056 MAPK10-322ENST00000641485 4530 ntBASIC2.93□□□□□ -1.94
SDC3O75056 API5P2-201ENST00000397055 1498 ntBASIC2.93□□□□□ -1.94
SDC3O75056 MIR449A-201ENST00000362113 91 ntBASIC2.93□□□□□ -1.94
SDC3O75056 SNORA18.3-201ENST00000384122 132 ntBASIC2.93□□□□□ -1.94
SDC3O75056 Y_RNA.548-201ENST00000384656 105 ntBASIC2.93□□□□□ -1.94
SDC3O75056 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
SDC3O75056 RPL21P3-201ENST00000395517 478 ntBASIC2.93□□□□□ -1.94
SDC3O75056 RPA3-203ENST00000401447 414 ntTSL 3 BASIC2.93□□□□□ -1.94
SDC3O75056 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.93□□□□□ -1.94
SDC3O75056 AC083875.1-201ENST00000419509 405 ntBASIC2.93□□□□□ -1.94
SDC3O75056 XKRYP1-201ENST00000423438 492 ntBASIC2.93□□□□□ -1.94
SDC3O75056 XKRYP2-201ENST00000432915 492 ntBASIC2.93□□□□□ -1.94
SDC3O75056 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC2.93□□□□□ -1.94
SDC3O75056 MTCO1P27-201ENST00000448269 226 ntBASIC2.93□□□□□ -1.94
SDC3O75056 RPL37P4-201ENST00000448908 268 ntBASIC2.93□□□□□ -1.94
SDC3O75056 SNRPGP6-201ENST00000451124 220 ntBASIC2.93□□□□□ -1.94
SDC3O75056 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC2.93□□□□□ -1.94
SDC3O75056 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC2.93□□□□□ -1.94
SDC3O75056 AC146507.2-201ENST00000460608 476 ntBASIC2.93□□□□□ -1.94
SDC3O75056 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC2.93□□□□□ -1.94
SDC3O75056 AC147055.4-201ENST00000504399 745 ntBASIC2.93□□□□□ -1.94
SDC3O75056 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC2.93□□□□□ -1.94
SDC3O75056 RN7SKP132-201ENST00000516001 208 ntBASIC2.93□□□□□ -1.94
SDC3O75056 RNA5SP367-201ENST00000516557 118 ntBASIC2.93□□□□□ -1.94
SDC3O75056 SCARNA20.6-201ENST00000517251 106 ntBASIC2.93□□□□□ -1.94
SDC3O75056 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC2.93□□□□□ -1.94
SDC3O75056 UBTFL10-201ENST00000528532 562 ntBASIC2.93□□□□□ -1.94
SDC3O75056 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC2.93□□□□□ -1.94
SDC3O75056 AL354943.1-201ENST00000572103 781 ntBASIC2.93□□□□□ -1.94
SDC3O75056 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC2.93□□□□□ -1.94
SDC3O75056 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC2.93□□□□□ -1.94
SDC3O75056 AC079089.3-201ENST00000603094 673 ntBASIC2.93□□□□□ -1.94
SDC3O75056 RNU6-88P-201ENST00000606801 100 ntBASIC2.93□□□□□ -1.94
SDC3O75056 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC2.93□□□□□ -1.94
SDC3O75056 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC2.93□□□□□ -1.94
SDC3O75056 TUSC7.1-201ENST00000610969 165 ntBASIC2.93□□□□□ -1.94
SDC3O75056 AC008443.7-201ENST00000622195 246 ntBASIC2.93□□□□□ -1.94
SDC3O75056 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC2.93□□□□□ -1.94
SDC3O75056 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC2.93□□□□□ -1.94
SDC3O75056 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
SDC3O75056 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
SDC3O75056 AC233263.6-201ENST00000631132 1963 ntBASIC2.92□□□□□ -1.94
SDC3O75056 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC2.92□□□□□ -1.94
SDC3O75056 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
SDC3O75056 AC073325.2-201ENST00000339545 159 ntBASIC2.92□□□□□ -1.94
SDC3O75056 SNORA51.4-201ENST00000364993 124 ntBASIC2.92□□□□□ -1.94
SDC3O75056 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
SDC3O75056 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC2.92□□□□□ -1.94
SDC3O75056 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
SDC3O75056 RNU6-1027P-201ENST00000383998 107 ntBASIC2.92□□□□□ -1.94
SDC3O75056 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
SDC3O75056 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC2.92□□□□□ -1.94
SDC3O75056 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC2.92□□□□□ -1.94
SDC3O75056 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC2.92□□□□□ -1.94
SDC3O75056 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.92□□□□□ -1.94
SDC3O75056 AC093156.1-201ENST00000440382 670 ntBASIC2.92□□□□□ -1.94
SDC3O75056 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC2.92□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 186.4 ms