Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC17.47■□□□□ 0.39
DDX28Q9NUL7 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC17.47■□□□□ 0.39
DDX28Q9NUL7 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
DDX28Q9NUL7 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
DDX28Q9NUL7 MOK-225ENST00000522867 1883 ntTSL 5 BASIC17.47■□□□□ 0.39
DDX28Q9NUL7 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
DDX28Q9NUL7 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
DDX28Q9NUL7 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC17.47■□□□□ 0.39
DDX28Q9NUL7 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.47■□□□□ 0.39
DDX28Q9NUL7 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
DDX28Q9NUL7 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC17.47■□□□□ 0.39
DDX28Q9NUL7 GOLGA2P11-201ENST00000562660 1621 ntBASIC17.47■□□□□ 0.39
DDX28Q9NUL7 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
DDX28Q9NUL7 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
DDX28Q9NUL7 KRT17P1-201ENST00000399211 1546 ntBASIC17.47■□□□□ 0.39
DDX28Q9NUL7 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC17.47■□□□□ 0.39
DDX28Q9NUL7 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 HES2-205ENST00000487437 968 ntTSL 3 BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 KRT16P6-202ENST00000425692 1426 ntBASIC17.46■□□□□ 0.39
DDX28Q9NUL7 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
DDX28Q9NUL7 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.38
DDX28Q9NUL7 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC17.45■□□□□ 0.38
DDX28Q9NUL7 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
DDX28Q9NUL7 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
DDX28Q9NUL7 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
DDX28Q9NUL7 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
DDX28Q9NUL7 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
DDX28Q9NUL7 AL138781.2-201ENST00000617896 1843 ntBASIC17.45■□□□□ 0.38
DDX28Q9NUL7 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
DDX28Q9NUL7 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
DDX28Q9NUL7 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
DDX28Q9NUL7 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.45■□□□□ 0.38
DDX28Q9NUL7 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC17.45■□□□□ 0.38
DDX28Q9NUL7 MAP2K4P1-201ENST00000438453 1195 ntBASIC17.45■□□□□ 0.38
DDX28Q9NUL7 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC17.45■□□□□ 0.38
DDX28Q9NUL7 AC023632.3-201ENST00000521633 145 ntBASIC17.45■□□□□ 0.38
DDX28Q9NUL7 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
DDX28Q9NUL7 AL050303.2-201ENST00000619798 666 ntBASIC17.45■□□□□ 0.38
DDX28Q9NUL7 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC17.45■□□□□ 0.38
DDX28Q9NUL7 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC17.45■□□□□ 0.38
DDX28Q9NUL7 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
DDX28Q9NUL7 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
DDX28Q9NUL7 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
DDX28Q9NUL7 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
DDX28Q9NUL7 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
DDX28Q9NUL7 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
DDX28Q9NUL7 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
DDX28Q9NUL7 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
DDX28Q9NUL7 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
DDX28Q9NUL7 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC17.45■□□□□ 0.38
DDX28Q9NUL7 NXN-202ENST00000537628 1340 ntTSL 3 BASIC17.45■□□□□ 0.38
DDX28Q9NUL7 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
DDX28Q9NUL7 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
DDX28Q9NUL7 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
DDX28Q9NUL7 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
DDX28Q9NUL7 PKD1P5-201ENST00000532415 10291 ntBASIC17.44■□□□□ 0.38
DDX28Q9NUL7 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.44■□□□□ 0.38
DDX28Q9NUL7 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
DDX28Q9NUL7 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
DDX28Q9NUL7 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
DDX28Q9NUL7 HLA-G-202ENST00000376815 851 ntBASIC17.44■□□□□ 0.38
DDX28Q9NUL7 HLA-G-203ENST00000376818 1127 ntBASIC17.44■□□□□ 0.38
DDX28Q9NUL7 GPX1P1-201ENST00000388829 606 ntBASIC17.44■□□□□ 0.38
DDX28Q9NUL7 CROCCP5-201ENST00000436658 830 ntBASIC17.44■□□□□ 0.38
DDX28Q9NUL7 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC17.44■□□□□ 0.38
DDX28Q9NUL7 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
DDX28Q9NUL7 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
DDX28Q9NUL7 AC093484.2-201ENST00000580996 2166 ntBASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms