Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC25.49■■□□□ 1.67
ABCA3Q99758 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC25.49■■□□□ 1.67
ABCA3Q99758 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC25.49■■□□□ 1.67
ABCA3Q99758 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
ABCA3Q99758 ZNF815P-204ENST00000434898 1737 ntBASIC25.49■■□□□ 1.67
ABCA3Q99758 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC25.49■■□□□ 1.67
ABCA3Q99758 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC25.49■■□□□ 1.67
ABCA3Q99758 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC25.49■■□□□ 1.67
ABCA3Q99758 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
ABCA3Q99758 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
ABCA3Q99758 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
ABCA3Q99758 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
ABCA3Q99758 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC25.49■■□□□ 1.67
ABCA3Q99758 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC25.49■■□□□ 1.67
ABCA3Q99758 AL592071.1-201ENST00000611956 408 ntBASIC25.49■■□□□ 1.67
ABCA3Q99758 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC25.48■■□□□ 1.67
ABCA3Q99758 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC25.48■■□□□ 1.67
ABCA3Q99758 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC25.48■■□□□ 1.67
ABCA3Q99758 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC25.48■■□□□ 1.67
ABCA3Q99758 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC25.48■■□□□ 1.67
ABCA3Q99758 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC25.48■■□□□ 1.67
ABCA3Q99758 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC25.48■■□□□ 1.67
ABCA3Q99758 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC25.48■■□□□ 1.67
ABCA3Q99758 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC25.48■■□□□ 1.67
ABCA3Q99758 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
ABCA3Q99758 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC25.48■■□□□ 1.67
ABCA3Q99758 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC25.48■■□□□ 1.67
ABCA3Q99758 CDV3-207ENST00000508481 661 ntTSL 3 BASIC25.48■■□□□ 1.67
ABCA3Q99758 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC25.48■■□□□ 1.67
ABCA3Q99758 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC25.48■■□□□ 1.67
ABCA3Q99758 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
ABCA3Q99758 Z83836.1-201ENST00000624605 1642 ntBASIC25.48■■□□□ 1.67
ABCA3Q99758 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC25.48■■□□□ 1.67
ABCA3Q99758 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
ABCA3Q99758 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
ABCA3Q99758 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC25.47■■□□□ 1.67
ABCA3Q99758 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
ABCA3Q99758 AC079834.2-201ENST00000609776 1949 ntBASIC25.47■■□□□ 1.67
ABCA3Q99758 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC25.47■■□□□ 1.67
ABCA3Q99758 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
ABCA3Q99758 KRT18P13-201ENST00000400056 1290 ntBASIC25.47■■□□□ 1.67
ABCA3Q99758 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
ABCA3Q99758 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC25.47■■□□□ 1.67
ABCA3Q99758 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC25.47■■□□□ 1.67
ABCA3Q99758 AP001005.1-201ENST00000571755 1248 ntBASIC25.47■■□□□ 1.67
ABCA3Q99758 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC25.47■■□□□ 1.67
ABCA3Q99758 CALM3-211ENST00000598871 561 ntTSL 4 BASIC25.47■■□□□ 1.67
ABCA3Q99758 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC25.47■■□□□ 1.67
ABCA3Q99758 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC25.47■■□□□ 1.67
ABCA3Q99758 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
ABCA3Q99758 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC25.47■■□□□ 1.67
ABCA3Q99758 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC25.47■■□□□ 1.67
ABCA3Q99758 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC25.46■■□□□ 1.67
ABCA3Q99758 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
ABCA3Q99758 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
ABCA3Q99758 MIR574-201ENST00000385209 96 ntBASIC25.46■■□□□ 1.67
ABCA3Q99758 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC25.46■■□□□ 1.67
ABCA3Q99758 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
ABCA3Q99758 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC25.46■■□□□ 1.67
ABCA3Q99758 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC25.46■■□□□ 1.67
ABCA3Q99758 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
ABCA3Q99758 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC25.46■■□□□ 1.67
ABCA3Q99758 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC25.46■■□□□ 1.67
ABCA3Q99758 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
ABCA3Q99758 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC25.46■■□□□ 1.67
ABCA3Q99758 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC25.46■■□□□ 1.67
ABCA3Q99758 ME2-216ENST00000639850 2331 ntTSL 5 BASIC25.46■■□□□ 1.67
ABCA3Q99758 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC25.46■■□□□ 1.67
ABCA3Q99758 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
ABCA3Q99758 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
ABCA3Q99758 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC25.46■■□□□ 1.67
ABCA3Q99758 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
ABCA3Q99758 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
ABCA3Q99758 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
ABCA3Q99758 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
ABCA3Q99758 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
ABCA3Q99758 PPIE-208ENST00000470213 927 ntTSL 3 BASIC25.46■■□□□ 1.67
ABCA3Q99758 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC25.46■■□□□ 1.67
ABCA3Q99758 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC25.46■■□□□ 1.67
ABCA3Q99758 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC25.46■■□□□ 1.67
ABCA3Q99758 AL773604.1-201ENST00000617417 272 ntBASIC25.46■■□□□ 1.67
ABCA3Q99758 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC25.46■■□□□ 1.67
ABCA3Q99758 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC25.46■■□□□ 1.67
ABCA3Q99758 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC25.45■■□□□ 1.67
ABCA3Q99758 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC25.45■■□□□ 1.67
ABCA3Q99758 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC25.45■■□□□ 1.67
ABCA3Q99758 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC25.45■■□□□ 1.67
ABCA3Q99758 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
ABCA3Q99758 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
ABCA3Q99758 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC25.45■■□□□ 1.66
ABCA3Q99758 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC25.45■■□□□ 1.66
ABCA3Q99758 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC25.45■■□□□ 1.66
ABCA3Q99758 AP005901.3-202ENST00000581653 237 ntBASIC25.45■■□□□ 1.66
ABCA3Q99758 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
ABCA3Q99758 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC25.45■■□□□ 1.66
ABCA3Q99758 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
ABCA3Q99758 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
ABCA3Q99758 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC25.45■■□□□ 1.66
ABCA3Q99758 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC25.45■■□□□ 1.66
ABCA3Q99758 AC026310.3-201ENST00000625186 2373 ntBASIC25.44■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms