Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 AC018712.1-201ENST00000455767 687 ntBASIC31.73■■■□□ 2.67
IFT140Q96RY7 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC31.73■■■□□ 2.67
IFT140Q96RY7 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
IFT140Q96RY7 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC31.73■■■□□ 2.67
IFT140Q96RY7 AC148477.8-201ENST00000624298 468 ntBASIC31.73■■■□□ 2.67
IFT140Q96RY7 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
IFT140Q96RY7 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
IFT140Q96RY7 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC31.73■■■□□ 2.67
IFT140Q96RY7 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
IFT140Q96RY7 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC31.73■■■□□ 2.67
IFT140Q96RY7 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC31.72■■■□□ 2.67
IFT140Q96RY7 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
IFT140Q96RY7 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
IFT140Q96RY7 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
IFT140Q96RY7 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
IFT140Q96RY7 FABP5-202ENST00000396359 986 ntTSL 5 BASIC31.72■■■□□ 2.67
IFT140Q96RY7 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC31.72■■■□□ 2.67
IFT140Q96RY7 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC31.72■■■□□ 2.67
IFT140Q96RY7 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC31.72■■■□□ 2.67
IFT140Q96RY7 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC31.72■■■□□ 2.67
IFT140Q96RY7 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
IFT140Q96RY7 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
IFT140Q96RY7 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
IFT140Q96RY7 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
IFT140Q96RY7 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
IFT140Q96RY7 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC31.72■■■□□ 2.67
IFT140Q96RY7 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC31.72■■■□□ 2.67
IFT140Q96RY7 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC31.72■■■□□ 2.67
IFT140Q96RY7 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC31.72■■■□□ 2.67
IFT140Q96RY7 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
IFT140Q96RY7 RPL18-209ENST00000550645 463 ntTSL 5 BASIC31.72■■■□□ 2.67
IFT140Q96RY7 RPL18-214ENST00000552588 559 ntTSL 3 BASIC31.72■■■□□ 2.67
IFT140Q96RY7 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC31.72■■■□□ 2.67
IFT140Q96RY7 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC31.71■■■□□ 2.67
IFT140Q96RY7 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC31.71■■■□□ 2.67
IFT140Q96RY7 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
IFT140Q96RY7 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC31.71■■■□□ 2.67
IFT140Q96RY7 FAM197Y8-203ENST00000450145 560 ntBASIC31.71■■■□□ 2.67
IFT140Q96RY7 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC31.71■■■□□ 2.67
IFT140Q96RY7 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC31.71■■■□□ 2.67
IFT140Q96RY7 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC31.71■■■□□ 2.67
IFT140Q96RY7 GPR32P1-201ENST00000601788 811 ntBASIC31.71■■■□□ 2.67
IFT140Q96RY7 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC31.71■■■□□ 2.67
IFT140Q96RY7 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
IFT140Q96RY7 FBXW4P1-201ENST00000426721 2239 ntBASIC31.71■■■□□ 2.67
IFT140Q96RY7 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC31.71■■■□□ 2.67
IFT140Q96RY7 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
IFT140Q96RY7 MYB-221ENST00000527615 2381 ntTSL 5 BASIC31.7■■■□□ 2.67
IFT140Q96RY7 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
IFT140Q96RY7 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC31.7■■■□□ 2.66
IFT140Q96RY7 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC31.7■■■□□ 2.66
IFT140Q96RY7 AL355385.1-201ENST00000606123 409 ntBASIC31.7■■■□□ 2.66
IFT140Q96RY7 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC31.7■■■□□ 2.66
IFT140Q96RY7 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC31.7■■■□□ 2.66
IFT140Q96RY7 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
IFT140Q96RY7 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC31.7■■■□□ 2.66
IFT140Q96RY7 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC31.69■■■□□ 2.66
IFT140Q96RY7 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC31.69■■■□□ 2.66
IFT140Q96RY7 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC31.69■■■□□ 2.66
IFT140Q96RY7 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
IFT140Q96RY7 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC31.69■■■□□ 2.66
IFT140Q96RY7 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
IFT140Q96RY7 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
IFT140Q96RY7 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC31.69■■■□□ 2.66
IFT140Q96RY7 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC31.69■■■□□ 2.66
IFT140Q96RY7 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC31.69■■■□□ 2.66
IFT140Q96RY7 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
IFT140Q96RY7 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
IFT140Q96RY7 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC31.68■■■□□ 2.66
IFT140Q96RY7 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
IFT140Q96RY7 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
IFT140Q96RY7 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC31.68■■■□□ 2.66
IFT140Q96RY7 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC31.68■■■□□ 2.66
IFT140Q96RY7 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC31.68■■■□□ 2.66
IFT140Q96RY7 AP003733.1-201ENST00000491725 852 ntBASIC31.68■■■□□ 2.66
IFT140Q96RY7 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC31.68■■■□□ 2.66
IFT140Q96RY7 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC31.68■■■□□ 2.66
IFT140Q96RY7 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC31.68■■■□□ 2.66
IFT140Q96RY7 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC31.68■■■□□ 2.66
IFT140Q96RY7 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC31.67■■■□□ 2.66
IFT140Q96RY7 AC022898.2-201ENST00000616822 1312 ntBASIC31.67■■■□□ 2.66
IFT140Q96RY7 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC31.67■■■□□ 2.66
IFT140Q96RY7 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC31.67■■■□□ 2.66
IFT140Q96RY7 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
IFT140Q96RY7 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
IFT140Q96RY7 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC31.67■■■□□ 2.66
IFT140Q96RY7 AC005104.2-201ENST00000427818 678 ntBASIC31.67■■■□□ 2.66
IFT140Q96RY7 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC31.67■■■□□ 2.66
IFT140Q96RY7 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
IFT140Q96RY7 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
IFT140Q96RY7 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC31.67■■■□□ 2.66
IFT140Q96RY7 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC31.67■■■□□ 2.66
IFT140Q96RY7 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
IFT140Q96RY7 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
IFT140Q96RY7 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC31.67■■■□□ 2.66
IFT140Q96RY7 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC31.67■■■□□ 2.66
IFT140Q96RY7 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
IFT140Q96RY7 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC31.66■■■□□ 2.66
IFT140Q96RY7 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
IFT140Q96RY7 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms