Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC18.97■□□□□ 0.63
VPS35Q96QK1 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC18.97■□□□□ 0.63
VPS35Q96QK1 AC097488.1-201ENST00000507834 756 ntBASIC18.97■□□□□ 0.63
VPS35Q96QK1 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.97■□□□□ 0.63
VPS35Q96QK1 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC18.97■□□□□ 0.63
VPS35Q96QK1 FITM1-202ENST00000559294 800 ntBASIC18.97■□□□□ 0.63
VPS35Q96QK1 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.97■□□□□ 0.63
VPS35Q96QK1 AP000525.1-201ENST00000608286 694 ntBASIC18.97■□□□□ 0.63
VPS35Q96QK1 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS35Q96QK1 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS35Q96QK1 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
VPS35Q96QK1 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VPS35Q96QK1 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
VPS35Q96QK1 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
VPS35Q96QK1 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
VPS35Q96QK1 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
VPS35Q96QK1 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS35Q96QK1 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS35Q96QK1 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS35Q96QK1 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC18.96■□□□□ 0.63
VPS35Q96QK1 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS35Q96QK1 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS35Q96QK1 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.96■□□□□ 0.63
VPS35Q96QK1 AIRN-201ENST00000601203 4374 ntBASIC18.96■□□□□ 0.63
VPS35Q96QK1 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VPS35Q96QK1 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS35Q96QK1 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS35Q96QK1 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.96■□□□□ 0.63
VPS35Q96QK1 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC18.96■□□□□ 0.63
VPS35Q96QK1 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC18.96■□□□□ 0.63
VPS35Q96QK1 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VPS35Q96QK1 BX088651.1-201ENST00000540551 451 ntBASIC18.96■□□□□ 0.63
VPS35Q96QK1 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
VPS35Q96QK1 CKBP1-201ENST00000565489 1086 ntBASIC18.96■□□□□ 0.63
VPS35Q96QK1 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC18.96■□□□□ 0.63
VPS35Q96QK1 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VPS35Q96QK1 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.96■□□□□ 0.63
VPS35Q96QK1 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.96■□□□□ 0.63
VPS35Q96QK1 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VPS35Q96QK1 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.96■□□□□ 0.63
VPS35Q96QK1 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VPS35Q96QK1 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS35Q96QK1 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS35Q96QK1 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VPS35Q96QK1 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.96■□□□□ 0.63
VPS35Q96QK1 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS35Q96QK1 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS35Q96QK1 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS35Q96QK1 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VPS35Q96QK1 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.95■□□□□ 0.62
VPS35Q96QK1 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
VPS35Q96QK1 TEX21P-204ENST00000641479 1693 ntBASIC18.95■□□□□ 0.62
VPS35Q96QK1 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS35Q96QK1 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS35Q96QK1 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS35Q96QK1 AL032819.2-201ENST00000624543 2162 ntBASIC18.95■□□□□ 0.62
VPS35Q96QK1 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
VPS35Q96QK1 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VPS35Q96QK1 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VPS35Q96QK1 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS35Q96QK1 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS35Q96QK1 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS35Q96QK1 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS35Q96QK1 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC18.95■□□□□ 0.62
VPS35Q96QK1 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS35Q96QK1 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC18.95■□□□□ 0.62
VPS35Q96QK1 SLC25A1P4-201ENST00000567977 778 ntBASIC18.95■□□□□ 0.62
VPS35Q96QK1 GLDC-219ENST00000640208 420 ntTSL 2 BASIC18.95■□□□□ 0.62
VPS35Q96QK1 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
VPS35Q96QK1 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS35Q96QK1 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.95■□□□□ 0.62
VPS35Q96QK1 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
VPS35Q96QK1 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.95■□□□□ 0.62
VPS35Q96QK1 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC18.95■□□□□ 0.62
VPS35Q96QK1 AC141586.3-201ENST00000562166 1838 ntBASIC18.95■□□□□ 0.62
VPS35Q96QK1 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS35Q96QK1 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS35Q96QK1 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS35Q96QK1 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.95■□□□□ 0.62
VPS35Q96QK1 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS35Q96QK1 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS35Q96QK1 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
VPS35Q96QK1 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
VPS35Q96QK1 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.94■□□□□ 0.62
VPS35Q96QK1 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC18.94■□□□□ 0.62
VPS35Q96QK1 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
VPS35Q96QK1 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS35Q96QK1 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.94■□□□□ 0.62
VPS35Q96QK1 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS35Q96QK1 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS35Q96QK1 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.94■□□□□ 0.62
VPS35Q96QK1 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS35Q96QK1 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
VPS35Q96QK1 MFAP1P1-201ENST00000442257 1255 ntBASIC18.94■□□□□ 0.62
VPS35Q96QK1 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS35Q96QK1 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS35Q96QK1 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS35Q96QK1 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS35Q96QK1 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS35Q96QK1 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms