Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC22.68■■□□□ 1.22
SMC1BQ8NDV3 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC22.68■■□□□ 1.22
SMC1BQ8NDV3 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC22.68■■□□□ 1.22
SMC1BQ8NDV3 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC22.68■■□□□ 1.22
SMC1BQ8NDV3 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
SMC1BQ8NDV3 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC22.68■■□□□ 1.22
SMC1BQ8NDV3 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC22.68■■□□□ 1.22
SMC1BQ8NDV3 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SMC1BQ8NDV3 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SMC1BQ8NDV3 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SMC1BQ8NDV3 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SMC1BQ8NDV3 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
SMC1BQ8NDV3 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
SMC1BQ8NDV3 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC22.67■■□□□ 1.22
SMC1BQ8NDV3 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC22.67■■□□□ 1.22
SMC1BQ8NDV3 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC22.67■■□□□ 1.22
SMC1BQ8NDV3 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC22.67■■□□□ 1.22
SMC1BQ8NDV3 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC22.67■■□□□ 1.22
SMC1BQ8NDV3 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC22.67■■□□□ 1.22
SMC1BQ8NDV3 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC22.67■■□□□ 1.22
SMC1BQ8NDV3 AC148477.8-201ENST00000624298 468 ntBASIC22.67■■□□□ 1.22
SMC1BQ8NDV3 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC22.67■■□□□ 1.22
SMC1BQ8NDV3 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC22.67■■□□□ 1.22
SMC1BQ8NDV3 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SMC1BQ8NDV3 Z83836.1-201ENST00000624605 1642 ntBASIC22.67■■□□□ 1.22
SMC1BQ8NDV3 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
SMC1BQ8NDV3 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
SMC1BQ8NDV3 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SMC1BQ8NDV3 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
SMC1BQ8NDV3 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC22.66■■□□□ 1.22
SMC1BQ8NDV3 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SMC1BQ8NDV3 UBC-206ENST00000538617 1303 ntTSL 5 BASIC22.66■■□□□ 1.22
SMC1BQ8NDV3 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SMC1BQ8NDV3 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
SMC1BQ8NDV3 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
SMC1BQ8NDV3 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
SMC1BQ8NDV3 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SMC1BQ8NDV3 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
SMC1BQ8NDV3 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC22.66■■□□□ 1.22
SMC1BQ8NDV3 AL157888.1-201ENST00000631930 593 ntBASIC22.66■■□□□ 1.22
SMC1BQ8NDV3 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SMC1BQ8NDV3 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC22.66■■□□□ 1.22
SMC1BQ8NDV3 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC22.66■■□□□ 1.22
SMC1BQ8NDV3 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC22.66■■□□□ 1.22
SMC1BQ8NDV3 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
SMC1BQ8NDV3 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
SMC1BQ8NDV3 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
SMC1BQ8NDV3 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC22.65■■□□□ 1.22
SMC1BQ8NDV3 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
SMC1BQ8NDV3 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
SMC1BQ8NDV3 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
SMC1BQ8NDV3 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC22.65■■□□□ 1.22
SMC1BQ8NDV3 RPS8P6-201ENST00000426177 609 ntBASIC22.65■■□□□ 1.22
SMC1BQ8NDV3 GRAMD4P1-201ENST00000435181 1110 ntBASIC22.65■■□□□ 1.22
SMC1BQ8NDV3 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC22.65■■□□□ 1.22
SMC1BQ8NDV3 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC22.65■■□□□ 1.22
SMC1BQ8NDV3 BET1L-206ENST00000486280 665 ntTSL 3 BASIC22.65■■□□□ 1.22
SMC1BQ8NDV3 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SMC1BQ8NDV3 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC22.65■■□□□ 1.22
SMC1BQ8NDV3 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
SMC1BQ8NDV3 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC22.65■■□□□ 1.22
SMC1BQ8NDV3 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
SMC1BQ8NDV3 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
SMC1BQ8NDV3 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
SMC1BQ8NDV3 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
SMC1BQ8NDV3 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
SMC1BQ8NDV3 AC233723.2-201ENST00000623798 2106 ntBASIC22.64■■□□□ 1.22
SMC1BQ8NDV3 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC22.64■■□□□ 1.22
SMC1BQ8NDV3 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
SMC1BQ8NDV3 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
SMC1BQ8NDV3 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
SMC1BQ8NDV3 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC22.64■■□□□ 1.22
SMC1BQ8NDV3 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
SMC1BQ8NDV3 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.21
SMC1BQ8NDV3 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
SMC1BQ8NDV3 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC22.64■■□□□ 1.21
SMC1BQ8NDV3 HTR5BP-201ENST00000430851 1154 ntBASIC22.64■■□□□ 1.21
SMC1BQ8NDV3 AC139887.3-201ENST00000568585 713 ntBASIC22.64■■□□□ 1.21
SMC1BQ8NDV3 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
SMC1BQ8NDV3 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC22.64■■□□□ 1.21
SMC1BQ8NDV3 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC22.64■■□□□ 1.21
SMC1BQ8NDV3 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
SMC1BQ8NDV3 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC22.64■■□□□ 1.21
SMC1BQ8NDV3 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC22.64■■□□□ 1.21
SMC1BQ8NDV3 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC22.64■■□□□ 1.21
SMC1BQ8NDV3 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
SMC1BQ8NDV3 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
SMC1BQ8NDV3 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
SMC1BQ8NDV3 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC22.63■■□□□ 1.21
SMC1BQ8NDV3 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
SMC1BQ8NDV3 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
SMC1BQ8NDV3 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC22.63■■□□□ 1.21
SMC1BQ8NDV3 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC22.63■■□□□ 1.21
SMC1BQ8NDV3 NUS1P2-201ENST00000417358 873 ntBASIC22.63■■□□□ 1.21
SMC1BQ8NDV3 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC22.63■■□□□ 1.21
SMC1BQ8NDV3 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
SMC1BQ8NDV3 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
SMC1BQ8NDV3 RPS15-207ENST00000591032 550 ntTSL 3 BASIC22.63■■□□□ 1.21
SMC1BQ8NDV3 IGHV3OR16-7-201ENST00000604106 360 ntBASIC22.63■■□□□ 1.21
SMC1BQ8NDV3 AL390719.2-201ENST00000606993 987 ntBASIC22.63■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms