Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC23.42■■□□□ 1.34
USP48Q86UV5 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
USP48Q86UV5 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC23.42■■□□□ 1.34
USP48Q86UV5 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC23.42■■□□□ 1.34
USP48Q86UV5 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC23.42■■□□□ 1.34
USP48Q86UV5 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC23.42■■□□□ 1.34
USP48Q86UV5 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
USP48Q86UV5 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
USP48Q86UV5 AL020996.1-203ENST00000536896 2307 ntBASIC23.41■■□□□ 1.34
USP48Q86UV5 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
USP48Q86UV5 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC23.41■■□□□ 1.34
USP48Q86UV5 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC23.41■■□□□ 1.34
USP48Q86UV5 YBX1P10-201ENST00000444752 975 ntBASIC23.41■■□□□ 1.34
USP48Q86UV5 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC23.41■■□□□ 1.34
USP48Q86UV5 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC23.41■■□□□ 1.34
USP48Q86UV5 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
USP48Q86UV5 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC23.41■■□□□ 1.34
USP48Q86UV5 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
USP48Q86UV5 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC23.41■■□□□ 1.34
USP48Q86UV5 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
USP48Q86UV5 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC23.41■■□□□ 1.34
USP48Q86UV5 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
USP48Q86UV5 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC23.41■■□□□ 1.34
USP48Q86UV5 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
USP48Q86UV5 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.34
USP48Q86UV5 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
USP48Q86UV5 TFP1-202ENST00000475455 1573 ntBASIC23.4■■□□□ 1.34
USP48Q86UV5 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC23.4■■□□□ 1.34
USP48Q86UV5 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC23.4■■□□□ 1.34
USP48Q86UV5 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
USP48Q86UV5 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
USP48Q86UV5 ANKRD20A18P-201ENST00000359341 492 ntBASIC23.4■■□□□ 1.34
USP48Q86UV5 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC23.4■■□□□ 1.34
USP48Q86UV5 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC23.4■■□□□ 1.34
USP48Q86UV5 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.34
USP48Q86UV5 AL671277.2-201ENST00000458060 996 ntBASIC23.4■■□□□ 1.34
USP48Q86UV5 AL359075.1-203ENST00000462729 1002 ntBASIC23.4■■□□□ 1.34
USP48Q86UV5 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC23.4■■□□□ 1.34
USP48Q86UV5 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC23.4■■□□□ 1.34
USP48Q86UV5 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC23.4■■□□□ 1.34
USP48Q86UV5 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC23.4■■□□□ 1.34
USP48Q86UV5 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
USP48Q86UV5 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC23.4■■□□□ 1.34
USP48Q86UV5 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC23.4■■□□□ 1.34
USP48Q86UV5 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC23.4■■□□□ 1.34
USP48Q86UV5 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC23.4■■□□□ 1.34
USP48Q86UV5 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
USP48Q86UV5 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
USP48Q86UV5 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC23.4■■□□□ 1.34
USP48Q86UV5 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
USP48Q86UV5 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC23.4■■□□□ 1.34
USP48Q86UV5 AC096733.2-201ENST00000609937 1394 ntBASIC23.4■■□□□ 1.34
USP48Q86UV5 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC23.39■■□□□ 1.34
USP48Q86UV5 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC23.39■■□□□ 1.34
USP48Q86UV5 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
USP48Q86UV5 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC23.39■■□□□ 1.34
USP48Q86UV5 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC23.39■■□□□ 1.34
USP48Q86UV5 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC23.39■■□□□ 1.34
USP48Q86UV5 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.34
USP48Q86UV5 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
USP48Q86UV5 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
USP48Q86UV5 NDUFV2-AS1-203ENST00000608008 779 ntBASIC23.39■■□□□ 1.33
USP48Q86UV5 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC23.39■■□□□ 1.33
USP48Q86UV5 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
USP48Q86UV5 AC092338.2-201ENST00000568827 1415 ntBASIC23.39■■□□□ 1.33
USP48Q86UV5 AC116351.2-201ENST00000606540 1585 ntBASIC23.39■■□□□ 1.33
USP48Q86UV5 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
USP48Q86UV5 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC23.39■■□□□ 1.33
USP48Q86UV5 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
USP48Q86UV5 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
USP48Q86UV5 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC23.38■■□□□ 1.33
USP48Q86UV5 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC23.38■■□□□ 1.33
USP48Q86UV5 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
USP48Q86UV5 AC098818.2-201ENST00000564925 2320 ntBASIC23.38■■□□□ 1.33
USP48Q86UV5 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC23.38■■□□□ 1.33
USP48Q86UV5 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
USP48Q86UV5 AC005332.1-201ENST00000577698 1310 ntBASIC23.38■■□□□ 1.33
USP48Q86UV5 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
USP48Q86UV5 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
USP48Q86UV5 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
USP48Q86UV5 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
USP48Q86UV5 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
USP48Q86UV5 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
USP48Q86UV5 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
USP48Q86UV5 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
USP48Q86UV5 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC23.38■■□□□ 1.33
USP48Q86UV5 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
USP48Q86UV5 HOMER2P1-201ENST00000455653 964 ntBASIC23.38■■□□□ 1.33
USP48Q86UV5 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC23.38■■□□□ 1.33
USP48Q86UV5 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC23.38■■□□□ 1.33
USP48Q86UV5 AC116407.4-201ENST00000623319 1061 ntBASIC23.38■■□□□ 1.33
USP48Q86UV5 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC23.38■■□□□ 1.33
USP48Q86UV5 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC23.38■■□□□ 1.33
USP48Q86UV5 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
USP48Q86UV5 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC23.38■■□□□ 1.33
USP48Q86UV5 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
USP48Q86UV5 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
USP48Q86UV5 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
USP48Q86UV5 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC23.38■■□□□ 1.33
USP48Q86UV5 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms