Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.89■□□□□ 0.61
COL6A2P12110 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC18.89■□□□□ 0.61
COL6A2P12110 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC18.89■□□□□ 0.61
COL6A2P12110 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.89■□□□□ 0.61
COL6A2P12110 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.89■□□□□ 0.61
COL6A2P12110 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
COL6A2P12110 AC133041.1-202ENST00000642053 222 ntBASIC18.89■□□□□ 0.61
COL6A2P12110 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A2P12110 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.89■□□□□ 0.61
COL6A2P12110 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A2P12110 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A2P12110 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A2P12110 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A2P12110 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
COL6A2P12110 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A2P12110 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
COL6A2P12110 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A2P12110 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL6A2P12110 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A2P12110 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A2P12110 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.88■□□□□ 0.61
COL6A2P12110 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
COL6A2P12110 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A2P12110 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.88■□□□□ 0.61
COL6A2P12110 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC18.88■□□□□ 0.61
COL6A2P12110 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A2P12110 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC18.88■□□□□ 0.61
COL6A2P12110 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.88■□□□□ 0.61
COL6A2P12110 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A2P12110 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.88■□□□□ 0.61
COL6A2P12110 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.88■□□□□ 0.61
COL6A2P12110 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A2P12110 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A2P12110 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.88■□□□□ 0.61
COL6A2P12110 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A2P12110 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.88■□□□□ 0.61
COL6A2P12110 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A2P12110 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.88■□□□□ 0.61
COL6A2P12110 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
COL6A2P12110 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.88■□□□□ 0.61
COL6A2P12110 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A2P12110 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL6A2P12110 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
COL6A2P12110 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A2P12110 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A2P12110 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
COL6A2P12110 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A2P12110 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A2P12110 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A2P12110 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A2P12110 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A2P12110 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A2P12110 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A2P12110 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A2P12110 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A2P12110 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A2P12110 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.87■□□□□ 0.61
COL6A2P12110 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.87■□□□□ 0.61
COL6A2P12110 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC18.87■□□□□ 0.61
COL6A2P12110 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL6A2P12110 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.87■□□□□ 0.61
COL6A2P12110 UNC93B4-201ENST00000505679 747 ntBASIC18.87■□□□□ 0.61
COL6A2P12110 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.87■□□□□ 0.61
COL6A2P12110 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.87■□□□□ 0.61
COL6A2P12110 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
COL6A2P12110 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
COL6A2P12110 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.86■□□□□ 0.61
COL6A2P12110 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
COL6A2P12110 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A2P12110 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A2P12110 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A2P12110 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
COL6A2P12110 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
COL6A2P12110 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.86■□□□□ 0.61
COL6A2P12110 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.86■□□□□ 0.61
COL6A2P12110 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.86■□□□□ 0.61
COL6A2P12110 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A2P12110 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A2P12110 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
COL6A2P12110 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A2P12110 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A2P12110 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A2P12110 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A2P12110 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A2P12110 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.86■□□□□ 0.61
COL6A2P12110 GAMT-205ENST00000640762 751 ntTSL 5 BASIC18.86■□□□□ 0.61
COL6A2P12110 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
COL6A2P12110 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
COL6A2P12110 AC135050.7-201ENST00000624508 2218 ntBASIC18.86■□□□□ 0.61
COL6A2P12110 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A2P12110 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A2P12110 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
COL6A2P12110 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A2P12110 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A2P12110 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.86■□□□□ 0.61
COL6A2P12110 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A2P12110 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.86■□□□□ 0.61
COL6A2P12110 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A2P12110 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL6A2P12110 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms