Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC18■□□□□ 0.47
LDB3O75112 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC18■□□□□ 0.47
LDB3O75112 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC18■□□□□ 0.47
LDB3O75112 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC18■□□□□ 0.47
LDB3O75112 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC18■□□□□ 0.47
LDB3O75112 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC18■□□□□ 0.47
LDB3O75112 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC18■□□□□ 0.47
LDB3O75112 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC18■□□□□ 0.47
LDB3O75112 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
LDB3O75112 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
LDB3O75112 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
LDB3O75112 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC17.99■□□□□ 0.47
LDB3O75112 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
LDB3O75112 KRT17P2-201ENST00000300992 1314 ntBASIC17.99■□□□□ 0.47
LDB3O75112 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
LDB3O75112 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC17.99■□□□□ 0.47
LDB3O75112 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
LDB3O75112 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
LDB3O75112 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
LDB3O75112 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
LDB3O75112 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
LDB3O75112 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC17.99■□□□□ 0.47
LDB3O75112 TSPY23P-201ENST00000440136 739 ntBASIC17.99■□□□□ 0.47
LDB3O75112 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC17.99■□□□□ 0.47
LDB3O75112 AL355075.4-201ENST00000554988 638 ntBASIC17.99■□□□□ 0.47
LDB3O75112 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
LDB3O75112 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
LDB3O75112 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
LDB3O75112 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LDB3O75112 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
LDB3O75112 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
LDB3O75112 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
LDB3O75112 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
LDB3O75112 GOLGA6L5P-202ENST00000515341 1828 ntBASIC17.98■□□□□ 0.47
LDB3O75112 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LDB3O75112 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.98■□□□□ 0.47
LDB3O75112 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LDB3O75112 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.98■□□□□ 0.47
LDB3O75112 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC17.98■□□□□ 0.47
LDB3O75112 FAM207BP-201ENST00000447172 505 ntBASIC17.98■□□□□ 0.47
LDB3O75112 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.98■□□□□ 0.47
LDB3O75112 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC17.98■□□□□ 0.47
LDB3O75112 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC17.98■□□□□ 0.47
LDB3O75112 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
LDB3O75112 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC17.98■□□□□ 0.47
LDB3O75112 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LDB3O75112 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.98■□□□□ 0.47
LDB3O75112 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC17.98■□□□□ 0.47
LDB3O75112 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LDB3O75112 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LDB3O75112 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LDB3O75112 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LDB3O75112 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC17.98■□□□□ 0.47
LDB3O75112 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC17.98■□□□□ 0.47
LDB3O75112 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.98■□□□□ 0.47
LDB3O75112 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LDB3O75112 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LDB3O75112 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
LDB3O75112 KRT8P11-201ENST00000409686 1436 ntBASIC17.98■□□□□ 0.47
LDB3O75112 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
LDB3O75112 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC17.97■□□□□ 0.47
LDB3O75112 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC17.97■□□□□ 0.47
LDB3O75112 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.97■□□□□ 0.47
LDB3O75112 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LDB3O75112 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
LDB3O75112 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC17.97■□□□□ 0.47
LDB3O75112 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LDB3O75112 TSPY21P-201ENST00000433481 731 ntBASIC17.97■□□□□ 0.47
LDB3O75112 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.97■□□□□ 0.47
LDB3O75112 TSPY15P-201ENST00000457163 923 ntBASIC17.97■□□□□ 0.47
LDB3O75112 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC17.97■□□□□ 0.47
LDB3O75112 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC17.97■□□□□ 0.47
LDB3O75112 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC17.97■□□□□ 0.47
LDB3O75112 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC17.97■□□□□ 0.47
LDB3O75112 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.97■□□□□ 0.47
LDB3O75112 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LDB3O75112 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LDB3O75112 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
LDB3O75112 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC17.97■□□□□ 0.47
LDB3O75112 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC17.97■□□□□ 0.47
LDB3O75112 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC17.96■□□□□ 0.47
LDB3O75112 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC17.96■□□□□ 0.47
LDB3O75112 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC17.96■□□□□ 0.47
LDB3O75112 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
LDB3O75112 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LDB3O75112 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
LDB3O75112 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
LDB3O75112 RBM17P1-201ENST00000453646 1190 ntBASIC17.96■□□□□ 0.47
LDB3O75112 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.96■□□□□ 0.47
LDB3O75112 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
LDB3O75112 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
LDB3O75112 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC17.96■□□□□ 0.47
LDB3O75112 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC17.96■□□□□ 0.47
LDB3O75112 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
LDB3O75112 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
LDB3O75112 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.96■□□□□ 0.47
LDB3O75112 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LDB3O75112 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC17.96■□□□□ 0.47
LDB3O75112 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LDB3O75112 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms