Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 AL672167.1-204ENST00000641875 3017 ntBASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 MRPL42P3-201ENST00000401492 326 ntBASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 AC092809.3-201ENST00000415453 231 ntBASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 AL590632.1-201ENST00000424289 371 ntBASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 AL591704.1-201ENST00000432574 275 ntBASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 AL049745.1-201ENST00000433953 286 ntBASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 AC090774.1-201ENST00000435925 246 ntBASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 AL590399.6-201ENST00000446396 307 ntBASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 RPL21P23-201ENST00000446654 460 ntBASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 BTF3P6-201ENST00000448054 499 ntBASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 RNU6-352P-201ENST00000516908 107 ntBASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 RNU6-677P-201ENST00000516914 101 ntBASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 Y_RNA.708-201ENST00000516950 96 ntBASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 RPL23AP53-201ENST00000521854 457 ntBASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 RNU6-323P-201ENST00000521915 107 ntBASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 MAL2-201ENST00000522112 573 ntTSL 4 BASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 AP001880.2-201ENST00000538233 448 ntBASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 AC133555.2-201ENST00000550213 292 ntBASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 AC067852.3-201ENST00000589177 561 ntBASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 AC104763.2-201ENST00000604179 382 ntBASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 AL121932.1-201ENST00000605542 214 ntBASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 AC005014.2-201ENST00000607795 599 ntBASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 AC009229.3-201ENST00000608056 282 ntBASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 FAM27B-201ENST00000610601 213 ntBASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 PLCE1P1-201ENST00000622094 305 ntBASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 AC092608.2-201ENST00000624427 218 ntBASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 AC107068.1-201ENST00000563286 4218 ntBASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 MTND5P30-201ENST00000452896 1731 ntBASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 AC009643.2-201ENST00000603543 1448 ntBASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 AL139811.1-201ENST00000424779 2299 ntBASIC4.55□□□□□ -1.68
PTCHD1Q96NR3 HSPA8P4-201ENST00000511877 1920 ntBASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 HSP90AA5P-201ENST00000438353 2192 ntBASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 Y_RNA.401-201ENST00000383965 117 ntBASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 RNU6-331P-201ENST00000384724 107 ntBASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 MIR568-201ENST00000385036 95 ntBASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 MIR937-201ENST00000401271 86 ntBASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 RNA5SP113-201ENST00000410486 84 ntBASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 RNU6-712P-201ENST00000410558 100 ntBASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 SSXP9-201ENST00000417503 292 ntBASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 snoU13.3-201ENST00000459441 104 ntBASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 RN7SL558P-201ENST00000497468 299 ntBASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 AC026782.1-201ENST00000512952 449 ntBASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 OR7H2P-201ENST00000513483 306 ntBASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 RN7SKP60-201ENST00000516985 239 ntBASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 RNU1-54P-201ENST00000517181 120 ntBASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 RNU6-709P-201ENST00000517257 104 ntBASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 MIR4737-201ENST00000583979 81 ntBASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 AC022726.1-201ENST00000587475 207 ntBASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 AL354984.3-201ENST00000604803 325 ntBASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 AC011890.2-201ENST00000613393 294 ntBASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 U73479.1-201ENST00000618062 168 ntBASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 AC022418.1-201ENST00000624118 445 ntBASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.54□□□□□ -1.68
PTCHD1Q96NR3 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 182.6 ms