Protein–RNA interactions for Protein: Q96JB5

CDK5RAP3, CDK5 regulatory subunit-associated protein 3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3Q96JB5 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC4.31□□□□□ -1.72
CDK5RAP3Q96JB5 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CDK5RAP3Q96JB5 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
CDK5RAP3Q96JB5 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CDK5RAP3Q96JB5 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.31□□□□□ -1.72
CDK5RAP3Q96JB5 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 Y_RNA.409-201ENST00000383990 98 ntBASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 RNU6-213P-201ENST00000384051 104 ntBASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 RNU6-456P-201ENST00000384493 107 ntBASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 RNU6-754P-201ENST00000391166 107 ntBASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 FGFR1OP2P1-201ENST00000395943 500 ntBASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 RNU4-65P-201ENST00000410473 140 ntBASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 MTND1P23-201ENST00000416931 372 ntBASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 USP9YP18-201ENST00000425912 695 ntBASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 AC079780.1-201ENST00000428259 207 ntBASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 AL139415.2-201ENST00000431968 163 ntBASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 HMGB1P12-201ENST00000438594 598 ntBASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 AL662791.1-201ENST00000441992 928 ntBASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 AL121871.1-201ENST00000443413 436 ntBASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 AC013267.1-201ENST00000458227 267 ntBASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 AL672167.3-201ENST00000465951 960 ntBASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 RPS15AP36-201ENST00000492022 382 ntBASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 RN7SL323P-201ENST00000494712 295 ntBASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 RPL7P47-201ENST00000497299 556 ntBASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 UBE2CP3-201ENST00000502715 450 ntBASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 HMGB3P15-201ENST00000507326 574 ntBASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 AC009646.1-201ENST00000510455 318 ntBASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 AC125611.2-201ENST00000551907 647 ntBASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 ZNF192P1-203ENST00000565888 810 ntBASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 AL391646.1-201ENST00000603860 190 ntBASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 AC093838.1-201ENST00000613014 469 ntBASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 AC243312.2-201ENST00000623340 601 ntBASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 AC068724.3-201ENST00000625906 87 ntBASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 U6.98-201ENST00000637157 84 ntBASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 PAPPA-AS1-201ENST00000445861 2450 ntBASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CDK5RAP3Q96JB5 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 RNU5E-8P-201ENST00000363502 116 ntBASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 SNORD115-47-201ENST00000391226 86 ntBASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 RNU2-43P-201ENST00000410306 190 ntBASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 RN7SKP159-201ENST00000410657 292 ntBASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 RN7SKP263-201ENST00000411194 309 ntBASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 UBE2FP1-201ENST00000416536 447 ntBASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 RPL7P2-201ENST00000427639 268 ntBASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 TIMM9P3-201ENST00000428659 274 ntBASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 MRPS10P2-201ENST00000431226 381 ntBASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 CYCSP43-201ENST00000438233 310 ntBASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 AL121769.1-201ENST00000469473 401 ntBASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 AC103987.1-201ENST00000473394 348 ntBASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 AC068587.1-201ENST00000483613 781 ntBASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 AC109927.2-201ENST00000506416 303 ntBASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 ARL2BPP6-201ENST00000512757 439 ntBASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 RNU6-64P-201ENST00000517119 105 ntBASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 SUMO2P20-201ENST00000520803 283 ntBASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 AC011979.2-201ENST00000527568 352 ntBASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 CYCSP30-201ENST00000546447 172 ntBASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 CCNG2P1-201ENST00000549521 1000 ntBASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 AC067959.1-201ENST00000604334 379 ntBASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 AL137849.1-201ENST00000604767 169 ntBASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 AL034351.1-201ENST00000605288 668 ntBASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 AL450472.3-201ENST00000615578 367 ntBASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 AL391261.4-201ENST00000616012 481 ntBASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 MIR6130-201ENST00000619419 109 ntBASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 121.3 ms