Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC4.39□□□□□ -1.71
USP39Q53GS9 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.39□□□□□ -1.71
USP39Q53GS9 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.39□□□□□ -1.71
USP39Q53GS9 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC4.39□□□□□ -1.71
USP39Q53GS9 MIR3158-1-201ENST00000583596 81 ntBASIC4.39□□□□□ -1.71
USP39Q53GS9 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
USP39Q53GS9 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC4.39□□□□□ -1.71
USP39Q53GS9 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.39□□□□□ -1.71
USP39Q53GS9 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC4.39□□□□□ -1.71
USP39Q53GS9 AP001330.4-201ENST00000604350 154 ntBASIC4.39□□□□□ -1.71
USP39Q53GS9 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.39□□□□□ -1.71
USP39Q53GS9 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC4.39□□□□□ -1.71
USP39Q53GS9 uc_338.22-201ENST00000622722 187 ntBASIC4.39□□□□□ -1.71
USP39Q53GS9 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
USP39Q53GS9 USP44-208ENST00000552440 1818 ntTSL 5 BASIC4.39□□□□□ -1.71
USP39Q53GS9 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
USP39Q53GS9 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
USP39Q53GS9 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.39□□□□□ -1.71
USP39Q53GS9 AC134882.1-201ENST00000603738 1676 ntBASIC4.38□□□□□ -1.71
USP39Q53GS9 AC092447.10-201ENST00000620607 1652 ntBASIC4.38□□□□□ -1.71
USP39Q53GS9 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
USP39Q53GS9 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
USP39Q53GS9 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.38□□□□□ -1.71
USP39Q53GS9 RNY1P12-201ENST00000364251 105 ntBASIC4.38□□□□□ -1.71
USP39Q53GS9 MIR670-201ENST00000390142 98 ntBASIC4.38□□□□□ -1.71
USP39Q53GS9 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
USP39Q53GS9 HDGFP1-201ENST00000405943 252 ntBASIC4.38□□□□□ -1.71
USP39Q53GS9 RNU6-193P-201ENST00000410977 107 ntBASIC4.38□□□□□ -1.71
USP39Q53GS9 AC009310.1-201ENST00000414414 451 ntBASIC4.38□□□□□ -1.71
USP39Q53GS9 AL356095.1-201ENST00000417217 199 ntBASIC4.38□□□□□ -1.71
USP39Q53GS9 AC005517.2-201ENST00000424673 553 ntBASIC4.38□□□□□ -1.71
USP39Q53GS9 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC4.38□□□□□ -1.71
USP39Q53GS9 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC4.38□□□□□ -1.71
USP39Q53GS9 AC114495.1-201ENST00000441274 436 ntBASIC4.38□□□□□ -1.71
USP39Q53GS9 RPL32P28-201ENST00000443577 397 ntBASIC4.38□□□□□ -1.71
USP39Q53GS9 RPL21P89-201ENST00000444021 467 ntBASIC4.38□□□□□ -1.71
USP39Q53GS9 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC4.38□□□□□ -1.71
USP39Q53GS9 AC079781.2-201ENST00000446424 169 ntBASIC4.38□□□□□ -1.71
USP39Q53GS9 AL162151.2-201ENST00000448875 158 ntBASIC4.38□□□□□ -1.71
USP39Q53GS9 HMGN3P1-201ENST00000453847 193 ntBASIC4.38□□□□□ -1.71
USP39Q53GS9 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.38□□□□□ -1.71
USP39Q53GS9 RPS4XP10-201ENST00000465034 731 ntBASIC4.38□□□□□ -1.71
USP39Q53GS9 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC4.38□□□□□ -1.71
USP39Q53GS9 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC4.38□□□□□ -1.71
USP39Q53GS9 FTH1P24-201ENST00000503502 462 ntBASIC4.38□□□□□ -1.71
USP39Q53GS9 MTND4LP22-201ENST00000508209 276 ntBASIC4.38□□□□□ -1.71
USP39Q53GS9 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC4.38□□□□□ -1.71
USP39Q53GS9 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC4.38□□□□□ -1.71
USP39Q53GS9 RNU4ATAC8P-201ENST00000516196 109 ntBASIC4.38□□□□□ -1.71
USP39Q53GS9 RNU6-410P-201ENST00000517006 107 ntBASIC4.38□□□□□ -1.71
USP39Q53GS9 AC022634.1-201ENST00000520765 532 ntBASIC4.38□□□□□ -1.71
USP39Q53GS9 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC4.38□□□□□ -1.71
USP39Q53GS9 AC063950.1-201ENST00000552036 308 ntBASIC4.38□□□□□ -1.71
USP39Q53GS9 MEG8-218ENST00000556720 456 ntTSL 3 BASIC4.38□□□□□ -1.71
USP39Q53GS9 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4.38□□□□□ -1.71
USP39Q53GS9 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
USP39Q53GS9 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC4.38□□□□□ -1.71
USP39Q53GS9 AL353997.4-201ENST00000586196 166 ntBASIC4.38□□□□□ -1.71
USP39Q53GS9 AP001029.3-201ENST00000588063 596 ntBASIC4.38□□□□□ -1.71
USP39Q53GS9 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC4.38□□□□□ -1.71
USP39Q53GS9 7SK.7-201ENST00000603504 247 ntBASIC4.38□□□□□ -1.71
USP39Q53GS9 APOOP1-201ENST00000604695 592 ntBASIC4.38□□□□□ -1.71
USP39Q53GS9 AL022345.1-201ENST00000607292 135 ntBASIC4.38□□□□□ -1.71
USP39Q53GS9 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC4.38□□□□□ -1.71
USP39Q53GS9 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC4.38□□□□□ -1.71
USP39Q53GS9 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
USP39Q53GS9 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC4.38□□□□□ -1.71
USP39Q53GS9 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
USP39Q53GS9 AC139769.1-204ENST00000472297 1931 ntBASIC4.38□□□□□ -1.71
USP39Q53GS9 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
USP39Q53GS9 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.38□□□□□ -1.71
USP39Q53GS9 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.38□□□□□ -1.71
USP39Q53GS9 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.38□□□□□ -1.71
USP39Q53GS9 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.37□□□□□ -1.71
USP39Q53GS9 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
USP39Q53GS9 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
USP39Q53GS9 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.37□□□□□ -1.71
USP39Q53GS9 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
USP39Q53GS9 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
USP39Q53GS9 Y_RNA.100-201ENST00000363141 102 ntBASIC4.37□□□□□ -1.71
USP39Q53GS9 Y_RNA.197-201ENST00000364004 102 ntBASIC4.37□□□□□ -1.71
USP39Q53GS9 RNU6-522P-201ENST00000364497 107 ntBASIC4.37□□□□□ -1.71
USP39Q53GS9 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
USP39Q53GS9 Y_RNA.401-201ENST00000383965 117 ntBASIC4.37□□□□□ -1.71
USP39Q53GS9 RNU6-308P-201ENST00000390957 107 ntBASIC4.37□□□□□ -1.71
USP39Q53GS9 RNA5SP171-201ENST00000391071 115 ntBASIC4.37□□□□□ -1.71
USP39Q53GS9 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC4.37□□□□□ -1.71
USP39Q53GS9 AL139095.3-201ENST00000419672 1203 ntBASIC4.37□□□□□ -1.71
USP39Q53GS9 SNRPEP4-201ENST00000435815 279 ntBASIC4.37□□□□□ -1.71
USP39Q53GS9 AL138799.3-201ENST00000438968 350 ntBASIC4.37□□□□□ -1.71
USP39Q53GS9 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC4.37□□□□□ -1.71
USP39Q53GS9 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
USP39Q53GS9 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
USP39Q53GS9 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC4.37□□□□□ -1.71
USP39Q53GS9 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC4.37□□□□□ -1.71
USP39Q53GS9 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.37□□□□□ -1.71
USP39Q53GS9 MTCO1P29-201ENST00000496868 288 ntBASIC4.37□□□□□ -1.71
USP39Q53GS9 RNU1-45P-201ENST00000517191 141 ntBASIC4.37□□□□□ -1.71
USP39Q53GS9 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC4.37□□□□□ -1.71
USP39Q53GS9 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms