Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 RNA5SP270-201ENST00000411361 118 ntBASIC1.72□□□□□ -2.13
CHD3Q12873 BLOC1S2P1-201ENST00000428431 301 ntBASIC1.72□□□□□ -2.13
CHD3Q12873 AC245517.4-201ENST00000448601 281 ntBASIC1.72□□□□□ -2.13
CHD3Q12873 AL135752.1-201ENST00000479477 471 ntBASIC1.72□□□□□ -2.13
CHD3Q12873 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC1.72□□□□□ -2.13
CHD3Q12873 AC022493.1-201ENST00000492984 337 ntBASIC1.72□□□□□ -2.13
CHD3Q12873 OR52A4P-203ENST00000498233 1014 ntBASIC1.72□□□□□ -2.13
CHD3Q12873 AC025768.1-201ENST00000510057 267 ntBASIC1.72□□□□□ -2.13
CHD3Q12873 AC108078.2-201ENST00000510750 236 ntBASIC1.72□□□□□ -2.13
CHD3Q12873 OR5BM1P-201ENST00000512021 366 ntBASIC1.72□□□□□ -2.13
CHD3Q12873 SNORA31.13-201ENST00000516624 135 ntBASIC1.72□□□□□ -2.13
CHD3Q12873 BTF3P12-201ENST00000519620 469 ntBASIC1.72□□□□□ -2.13
CHD3Q12873 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.72□□□□□ -2.13
CHD3Q12873 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.72□□□□□ -2.13
CHD3Q12873 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC1.72□□□□□ -2.13
CHD3Q12873 VN1R80P-201ENST00000597126 338 ntBASIC1.72□□□□□ -2.13
CHD3Q12873 AL137246.1-201ENST00000607072 977 ntBASIC1.72□□□□□ -2.13
CHD3Q12873 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC1.72□□□□□ -2.13
CHD3Q12873 YWHAEP7-203ENST00000622054 312 ntBASIC1.72□□□□□ -2.13
CHD3Q12873 AC090740.1-201ENST00000623193 2262 ntBASIC1.72□□□□□ -2.13
CHD3Q12873 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
CHD3Q12873 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC1.71□□□□□ -2.13
CHD3Q12873 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.71□□□□□ -2.14
CHD3Q12873 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.71□□□□□ -2.14
CHD3Q12873 RNU6-670P-201ENST00000364312 104 ntBASIC1.71□□□□□ -2.14
CHD3Q12873 RNU6-707P-201ENST00000364647 95 ntBASIC1.71□□□□□ -2.14
CHD3Q12873 SNORA67.5-201ENST00000391036 107 ntBASIC1.71□□□□□ -2.14
CHD3Q12873 AC004022.2-201ENST00000413824 193 ntBASIC1.71□□□□□ -2.14
CHD3Q12873 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC1.71□□□□□ -2.14
CHD3Q12873 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC1.71□□□□□ -2.14
CHD3Q12873 ELOCP13-201ENST00000443934 329 ntBASIC1.71□□□□□ -2.14
CHD3Q12873 AC078857.1-201ENST00000469870 667 ntBASIC1.71□□□□□ -2.14
CHD3Q12873 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC1.71□□□□□ -2.14
CHD3Q12873 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC1.71□□□□□ -2.14
CHD3Q12873 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC1.71□□□□□ -2.14
CHD3Q12873 HMGB1P1-201ENST00000522557 636 ntBASIC1.71□□□□□ -2.14
CHD3Q12873 CYCSP26-201ENST00000534107 320 ntBASIC1.71□□□□□ -2.14
CHD3Q12873 AC074029.2-201ENST00000551045 634 ntBASIC1.71□□□□□ -2.14
CHD3Q12873 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC1.71□□□□□ -2.14
CHD3Q12873 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.71□□□□□ -2.14
CHD3Q12873 AC115989.2-201ENST00000578640 563 ntBASIC1.71□□□□□ -2.14
CHD3Q12873 AC106791.2-201ENST00000604680 391 ntBASIC1.71□□□□□ -2.14
CHD3Q12873 AL590282.1-201ENST00000610379 1136 ntBASIC1.71□□□□□ -2.14
CHD3Q12873 AC108479.2-201ENST00000617314 601 ntBASIC1.71□□□□□ -2.14
CHD3Q12873 AC018755.4-201ENST00000619715 454 ntBASIC1.71□□□□□ -2.14
CHD3Q12873 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC1.71□□□□□ -2.14
CHD3Q12873 MFSD8-245ENST00000641743 948 ntBASIC1.71□□□□□ -2.14
CHD3Q12873 AC123912.3-201ENST00000600907 1367 ntBASIC1.71□□□□□ -2.14
CHD3Q12873 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC1.71□□□□□ -2.14
CHD3Q12873 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
CHD3Q12873 SLC9B1P2-201ENST00000398120 1184 ntBASIC1.71□□□□□ -2.14
CHD3Q12873 AL121972.1-201ENST00000402023 252 ntBASIC1.71□□□□□ -2.14
CHD3Q12873 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.71□□□□□ -2.14
CHD3Q12873 RNU2-40P-201ENST00000410833 196 ntBASIC1.71□□□□□ -2.14
CHD3Q12873 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC1.71□□□□□ -2.14
CHD3Q12873 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC1.71□□□□□ -2.14
CHD3Q12873 MTND2P19-201ENST00000449129 1012 ntBASIC1.71□□□□□ -2.14
CHD3Q12873 RPL30P14-201ENST00000482744 348 ntBASIC1.71□□□□□ -2.14
CHD3Q12873 RNA5SP364-201ENST00000516938 78 ntBASIC1.71□□□□□ -2.14
CHD3Q12873 AL359821.1-201ENST00000605519 182 ntBASIC1.71□□□□□ -2.14
CHD3Q12873 AC113194.1-201ENST00000606037 500 ntBASIC1.71□□□□□ -2.14
CHD3Q12873 AC120053.1-201ENST00000607706 736 ntBASIC1.71□□□□□ -2.14
CHD3Q12873 AL391813.2-201ENST00000609113 322 ntBASIC1.71□□□□□ -2.14
CHD3Q12873 AC013562.2-201ENST00000611632 603 ntBASIC1.71□□□□□ -2.14
CHD3Q12873 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC1.71□□□□□ -2.14
CHD3Q12873 AL031601.2-202ENST00000622650 282 ntBASIC1.71□□□□□ -2.14
CHD3Q12873 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.71□□□□□ -2.14
CHD3Q12873 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC1.71□□□□□ -2.14
CHD3Q12873 ZNF355P-201ENST00000427301 3216 ntBASIC1.7□□□□□ -2.14
CHD3Q12873 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC1.7□□□□□ -2.14
CHD3Q12873 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
CHD3Q12873 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC1.7□□□□□ -2.14
CHD3Q12873 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC1.7□□□□□ -2.14
CHD3Q12873 RNU6-1072P-201ENST00000384703 107 ntBASIC1.7□□□□□ -2.14
CHD3Q12873 RNU6-443P-201ENST00000384780 107 ntBASIC1.7□□□□□ -2.14
CHD3Q12873 CASP3-203ENST00000393588 677 ntTSL 4 BASIC1.7□□□□□ -2.14
CHD3Q12873 TATDN1P1-201ENST00000414123 891 ntBASIC1.7□□□□□ -2.14
CHD3Q12873 AL513321.1-201ENST00000441175 761 ntBASIC1.7□□□□□ -2.14
CHD3Q12873 TPTE2P6-202ENST00000445572 1007 ntBASIC1.7□□□□□ -2.14
CHD3Q12873 AC068781.1-201ENST00000488231 618 ntBASIC1.7□□□□□ -2.14
CHD3Q12873 AC114322.1-201ENST00000506771 926 ntBASIC1.7□□□□□ -2.14
CHD3Q12873 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC1.7□□□□□ -2.14
CHD3Q12873 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC1.7□□□□□ -2.14
CHD3Q12873 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC1.7□□□□□ -2.14
CHD3Q12873 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC1.7□□□□□ -2.14
CHD3Q12873 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC1.7□□□□□ -2.14
CHD3Q12873 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC1.7□□□□□ -2.14
CHD3Q12873 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC1.7□□□□□ -2.14
CHD3Q12873 AC079610.2-201ENST00000604818 690 ntBASIC1.7□□□□□ -2.14
CHD3Q12873 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.69□□□□□ -2.14
CHD3Q12873 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC1.69□□□□□ -2.14
CHD3Q12873 RPS4XP3-201ENST00000398541 413 ntBASIC1.69□□□□□ -2.14
CHD3Q12873 MIR1303-201ENST00000408625 86 ntBASIC1.69□□□□□ -2.14
CHD3Q12873 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC1.69□□□□□ -2.14
CHD3Q12873 AL606495.1-201ENST00000422100 813 ntBASIC1.69□□□□□ -2.14
CHD3Q12873 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC1.69□□□□□ -2.14
CHD3Q12873 AL445646.1-201ENST00000431784 216 ntBASIC1.69□□□□□ -2.14
CHD3Q12873 IFNA20P-201ENST00000436840 528 ntBASIC1.69□□□□□ -2.14
CHD3Q12873 AC003989.2-201ENST00000440224 169 ntBASIC1.69□□□□□ -2.14
CHD3Q12873 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC1.69□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms