Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC108734.1-201ENST00000439549 399 ntBASIC3.37□□□□□ -1.87
MSH3P20585 PGBD4P3-201ENST00000440731 581 ntBASIC3.37□□□□□ -1.87
MSH3P20585 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC3.37□□□□□ -1.87
MSH3P20585 AC008264.1-201ENST00000447612 367 ntBASIC3.37□□□□□ -1.87
MSH3P20585 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC3.37□□□□□ -1.87
MSH3P20585 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC3.37□□□□□ -1.87
MSH3P20585 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC3.37□□□□□ -1.87
MSH3P20585 AC006390.1-201ENST00000508068 283 ntBASIC3.37□□□□□ -1.87
MSH3P20585 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.37□□□□□ -1.87
MSH3P20585 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC3.37□□□□□ -1.87
MSH3P20585 APOOP4-201ENST00000513530 597 ntBASIC3.37□□□□□ -1.87
MSH3P20585 RNU6-405P-201ENST00000516637 110 ntBASIC3.37□□□□□ -1.87
MSH3P20585 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC3.37□□□□□ -1.87
MSH3P20585 IGKV2-26-201ENST00000518305 343 ntBASIC3.37□□□□□ -1.87
MSH3P20585 AC107934.2-201ENST00000518653 310 ntBASIC3.37□□□□□ -1.87
MSH3P20585 AC093331.1-201ENST00000521474 169 ntBASIC3.37□□□□□ -1.87
MSH3P20585 AP003497.1-201ENST00000528472 562 ntBASIC3.37□□□□□ -1.87
MSH3P20585 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.37□□□□□ -1.87
MSH3P20585 OR4P1P-201ENST00000530808 1136 ntBASIC3.37□□□□□ -1.87
MSH3P20585 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC3.37□□□□□ -1.87
MSH3P20585 AC007458.1-201ENST00000542812 373 ntBASIC3.37□□□□□ -1.87
MSH3P20585 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
MSH3P20585 AC011611.1-201ENST00000552179 197 ntBASIC3.37□□□□□ -1.87
MSH3P20585 AL391156.1-201ENST00000554965 554 ntBASIC3.37□□□□□ -1.87
MSH3P20585 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC3.37□□□□□ -1.87
MSH3P20585 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.37□□□□□ -1.87
MSH3P20585 AC034268.2-201ENST00000571784 482 ntBASIC3.37□□□□□ -1.87
MSH3P20585 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.37□□□□□ -1.87
MSH3P20585 BNIP3P8-201ENST00000597863 560 ntBASIC3.37□□□□□ -1.87
MSH3P20585 AL136363.2-201ENST00000604173 851 ntBASIC3.37□□□□□ -1.87
MSH3P20585 MIR92B-201ENST00000607575 96 ntBASIC3.37□□□□□ -1.87
MSH3P20585 Z99129.1-201ENST00000612510 255 ntBASIC3.37□□□□□ -1.87
MSH3P20585 AC108479.2-201ENST00000617314 601 ntBASIC3.37□□□□□ -1.87
MSH3P20585 AC015967.1-201ENST00000619893 476 ntBASIC3.37□□□□□ -1.87
MSH3P20585 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.37□□□□□ -1.87
MSH3P20585 AC017071.1-201ENST00000564407 2204 ntBASIC3.37□□□□□ -1.87
MSH3P20585 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
MSH3P20585 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.37□□□□□ -1.87
MSH3P20585 MTND5P33-201ENST00000571250 1450 ntBASIC3.36□□□□□ -1.87
MSH3P20585 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
MSH3P20585 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
MSH3P20585 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
MSH3P20585 RPL7P25-201ENST00000404151 721 ntBASIC3.36□□□□□ -1.87
MSH3P20585 RNA5SP31-201ENST00000411144 127 ntBASIC3.36□□□□□ -1.87
MSH3P20585 AL359704.1-201ENST00000411586 781 ntBASIC3.36□□□□□ -1.87
MSH3P20585 AC093578.1-201ENST00000415219 368 ntBASIC3.36□□□□□ -1.87
MSH3P20585 USP9YP13-201ENST00000417797 480 ntBASIC3.36□□□□□ -1.87
MSH3P20585 OR1AA1P-201ENST00000419597 916 ntBASIC3.36□□□□□ -1.87
MSH3P20585 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.36□□□□□ -1.87
MSH3P20585 RPL23AP82-202ENST00000427528 469 ntBASIC3.36□□□□□ -1.87
MSH3P20585 MTND1P27-201ENST00000451117 902 ntBASIC3.36□□□□□ -1.87
MSH3P20585 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC3.36□□□□□ -1.87
MSH3P20585 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC3.36□□□□□ -1.87
MSH3P20585 CENPBD1P1-201ENST00000464061 469 ntBASIC3.36□□□□□ -1.87
MSH3P20585 AC021382.1-201ENST00000483523 359 ntBASIC3.36□□□□□ -1.87
MSH3P20585 RPL23AP55-201ENST00000498163 452 ntBASIC3.36□□□□□ -1.87
MSH3P20585 HMGB1P22-201ENST00000505315 124 ntBASIC3.36□□□□□ -1.87
MSH3P20585 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.36□□□□□ -1.87
MSH3P20585 RN7SKP244-201ENST00000516513 307 ntBASIC3.36□□□□□ -1.87
MSH3P20585 AP002453.2-201ENST00000533503 320 ntBASIC3.36□□□□□ -1.87
MSH3P20585 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC3.36□□□□□ -1.87
MSH3P20585 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.36□□□□□ -1.87
MSH3P20585 MTND1P15-201ENST00000579262 949 ntBASIC3.36□□□□□ -1.87
MSH3P20585 ZNF415P1-201ENST00000582279 1166 ntBASIC3.36□□□□□ -1.87
MSH3P20585 AC009977.1-201ENST00000586015 570 ntBASIC3.36□□□□□ -1.87
MSH3P20585 AC067852.3-201ENST00000589177 561 ntBASIC3.36□□□□□ -1.87
MSH3P20585 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.36□□□□□ -1.87
MSH3P20585 AC068790.6-201ENST00000602558 258 ntBASIC3.36□□□□□ -1.87
MSH3P20585 AC099778.2-201ENST00000610904 211 ntBASIC3.36□□□□□ -1.87
MSH3P20585 AC131902.3-201ENST00000611767 581 ntBASIC3.36□□□□□ -1.87
MSH3P20585 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC3.36□□□□□ -1.87
MSH3P20585 AC012314.7-201ENST00000619693 93 ntBASIC3.36□□□□□ -1.87
MSH3P20585 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC3.36□□□□□ -1.87
MSH3P20585 AC099654.13-201ENST00000639774 207 ntBASIC3.36□□□□□ -1.87
MSH3P20585 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.36□□□□□ -1.87
MSH3P20585 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
MSH3P20585 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
MSH3P20585 AC092125.1-201ENST00000562568 1995 ntBASIC3.36□□□□□ -1.87
MSH3P20585 AC010733.2-201ENST00000589496 5702 ntBASIC3.36□□□□□ -1.87
MSH3P20585 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
MSH3P20585 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.35□□□□□ -1.87
MSH3P20585 FRG1BP-201ENST00000278882 761 ntBASIC3.35□□□□□ -1.87
MSH3P20585 RNU6-600P-201ENST00000362524 99 ntBASIC3.35□□□□□ -1.87
MSH3P20585 SNORA71.3-201ENST00000362582 128 ntBASIC3.35□□□□□ -1.87
MSH3P20585 RNA5SP197-201ENST00000363357 119 ntBASIC3.35□□□□□ -1.87
MSH3P20585 Y_RNA.517-201ENST00000384551 106 ntBASIC3.35□□□□□ -1.87
MSH3P20585 MIR490-201ENST00000384865 128 ntBASIC3.35□□□□□ -1.87
MSH3P20585 MIR591-201ENST00000385290 95 ntBASIC3.35□□□□□ -1.87
MSH3P20585 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC3.35□□□□□ -1.87
MSH3P20585 AC092447.6-201ENST00000414578 210 ntBASIC3.35□□□□□ -1.87
MSH3P20585 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.35□□□□□ -1.87
MSH3P20585 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.35□□□□□ -1.87
MSH3P20585 NEK4P1-201ENST00000433383 879 ntBASIC3.35□□□□□ -1.87
MSH3P20585 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC3.35□□□□□ -1.87
MSH3P20585 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC3.35□□□□□ -1.87
MSH3P20585 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC3.35□□□□□ -1.87
MSH3P20585 PRSS3P4-201ENST00000453323 162 ntBASIC3.35□□□□□ -1.87
MSH3P20585 AC104308.1-201ENST00000454621 333 ntBASIC3.35□□□□□ -1.87
MSH3P20585 AP1S2P1-201ENST00000457344 379 ntBASIC3.35□□□□□ -1.87
MSH3P20585 SNORD121B-201ENST00000458838 81 ntBASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 210.1 ms