Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.03□□□□□ -1.92
HOXD4P09016 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.03□□□□□ -1.92
HOXD4P09016 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.03□□□□□ -1.92
HOXD4P09016 AC068647.1-201ENST00000489539 2265 ntBASIC3.03□□□□□ -1.92
HOXD4P09016 AC004925.1-201ENST00000624256 2706 ntBASIC3.03□□□□□ -1.92
HOXD4P09016 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC3.03□□□□□ -1.92
HOXD4P09016 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
HOXD4P09016 RNU5F-6P-201ENST00000362979 116 ntBASIC3.03□□□□□ -1.92
HOXD4P09016 Y_RNA.97-201ENST00000363094 102 ntBASIC3.03□□□□□ -1.92
HOXD4P09016 RNU6-623P-201ENST00000363143 105 ntBASIC3.03□□□□□ -1.92
HOXD4P09016 Y_RNA.194-201ENST00000363985 102 ntBASIC3.03□□□□□ -1.92
HOXD4P09016 SNORD82-201ENST00000365530 70 ntBASIC3.03□□□□□ -1.92
HOXD4P09016 RNU6-629P-201ENST00000384061 103 ntBASIC3.03□□□□□ -1.92
HOXD4P09016 SLC9B1P2-201ENST00000398120 1184 ntBASIC3.03□□□□□ -1.92
HOXD4P09016 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC3.03□□□□□ -1.92
HOXD4P09016 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.03□□□□□ -1.92
HOXD4P09016 HMGN1P24-201ENST00000412282 298 ntBASIC3.03□□□□□ -1.92
HOXD4P09016 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXD4P09016 AC006366.1-201ENST00000422002 759 ntBASIC3.03□□□□□ -1.92
HOXD4P09016 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC3.03□□□□□ -1.92
HOXD4P09016 RPL21P66-201ENST00000426566 466 ntBASIC3.03□□□□□ -1.92
HOXD4P09016 DLGAP5P1-201ENST00000430307 464 ntBASIC3.03□□□□□ -1.92
HOXD4P09016 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC3.03□□□□□ -1.92
HOXD4P09016 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXD4P09016 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXD4P09016 BMI1P1-201ENST00000445879 941 ntBASIC3.03□□□□□ -1.92
HOXD4P09016 COX6CP12-201ENST00000446748 202 ntBASIC3.03□□□□□ -1.92
HOXD4P09016 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.03□□□□□ -1.92
HOXD4P09016 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXD4P09016 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXD4P09016 HMGB1P36-201ENST00000487709 576 ntBASIC3.03□□□□□ -1.92
HOXD4P09016 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXD4P09016 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXD4P09016 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC3.03□□□□□ -1.92
HOXD4P09016 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC3.03□□□□□ -1.92
HOXD4P09016 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
HOXD4P09016 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.03□□□□□ -1.92
HOXD4P09016 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.03□□□□□ -1.92
HOXD4P09016 AC245166.1-201ENST00000521012 253 ntBASIC3.03□□□□□ -1.92
HOXD4P09016 AC022861.1-201ENST00000522981 663 ntBASIC3.03□□□□□ -1.92
HOXD4P09016 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC3.03□□□□□ -1.92
HOXD4P09016 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC3.03□□□□□ -1.92
HOXD4P09016 AC006362.1-201ENST00000567392 174 ntBASIC3.03□□□□□ -1.92
HOXD4P09016 MIR5004-201ENST00000579078 107 ntBASIC3.03□□□□□ -1.92
HOXD4P09016 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXD4P09016 ABBA01006766.1-201ENST00000584728 294 ntBASIC3.03□□□□□ -1.92
HOXD4P09016 BNIP3P23-201ENST00000599655 511 ntBASIC3.03□□□□□ -1.92
HOXD4P09016 AC012065.4-201ENST00000602445 679 ntBASIC3.03□□□□□ -1.92
HOXD4P09016 AC128687.1-201ENST00000605304 619 ntBASIC3.03□□□□□ -1.92
HOXD4P09016 AC012557.2-201ENST00000605919 418 ntBASIC3.03□□□□□ -1.92
HOXD4P09016 AC097468.3-201ENST00000607956 456 ntBASIC3.03□□□□□ -1.92
HOXD4P09016 HULC.1-201ENST00000612720 240 ntBASIC3.03□□□□□ -1.92
HOXD4P09016 AC025594.3-201ENST00000613068 790 ntBASIC3.03□□□□□ -1.92
HOXD4P09016 AC009878.1-201ENST00000621819 340 ntBASIC3.03□□□□□ -1.92
HOXD4P09016 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC3.03□□□□□ -1.92
HOXD4P09016 AC110801.1-201ENST00000623590 212 ntBASIC3.03□□□□□ -1.92
HOXD4P09016 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.03□□□□□ -1.92
HOXD4P09016 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
HOXD4P09016 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
HOXD4P09016 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.03□□□□□ -1.93
HOXD4P09016 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC3.02□□□□□ -1.93
HOXD4P09016 AC110774.1-201ENST00000623567 2018 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 AL353743.1-202ENST00000431724 1695 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 RNU6-989P-201ENST00000362756 107 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 RNU4-75P-201ENST00000364621 146 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXD4P09016 Y_RNA.500-201ENST00000384466 111 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
HOXD4P09016 AL031679.1-201ENST00000400616 525 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 MTCYBP36-201ENST00000404146 440 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 MIR320C1-201ENST00000408566 88 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 RNU4-78P-201ENST00000410940 126 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 AC109780.2-201ENST00000413467 845 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 MTCO3P12-201ENST00000416718 547 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.02□□□□□ -1.93
HOXD4P09016 MTCO2P34-201ENST00000421994 607 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.02□□□□□ -1.93
HOXD4P09016 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.02□□□□□ -1.93
HOXD4P09016 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXD4P09016 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC3.02□□□□□ -1.93
HOXD4P09016 AC236972.1-201ENST00000433225 199 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 MTCO3P5-201ENST00000433620 714 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC3.02□□□□□ -1.93
HOXD4P09016 AC127537.2-201ENST00000439258 465 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 AC092473.1-201ENST00000441098 221 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 AC002381.1-201ENST00000447049 280 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXD4P09016 RNU6-956P-201ENST00000458868 103 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.02□□□□□ -1.93
HOXD4P09016 AC021205.2-201ENST00000480069 347 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 FAM172BP-201ENST00000487497 1089 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC3.02□□□□□ -1.93
HOXD4P09016 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC3.02□□□□□ -1.93
HOXD4P09016 RN7SL504P-201ENST00000494496 287 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXD4P09016 COX6CP8-201ENST00000522620 226 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 AP004247.1-201ENST00000531556 1289 ntBASIC3.02□□□□□ -1.93
HOXD4P09016 AC024224.1-201ENST00000538284 609 ntBASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 168.5 ms