Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 OR4H12P-201ENST00000556269 907 ntBASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 AMZ2P1-203ENST00000565833 850 ntBASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 AC004584.2-201ENST00000570407 410 ntBASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 AC012669.1-201ENST00000603209 283 ntBASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 AL160281.1-201ENST00000605307 311 ntBASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 AC132068.1-201ENST00000623805 459 ntBASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 ASNSP1-201ENST00000518311 1939 ntBASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 AC092376.2-201ENST00000622621 4116 ntBASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 RNU6-708P-201ENST00000384217 107 ntBASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 RNA5SP187-201ENST00000384400 119 ntBASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 RNA5SP284-201ENST00000384547 118 ntBASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 MIR215-201ENST00000384858 110 ntBASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 RNU6-493P-201ENST00000391321 108 ntBASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 AL603910.2-201ENST00000407268 136 ntBASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 RNU6-1203P-201ENST00000410703 110 ntBASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 RNU4-78P-201ENST00000410940 126 ntBASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 RNU6-130P-201ENST00000411112 103 ntBASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 PPP1R11P2-201ENST00000423543 382 ntBASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 EI24P4-201ENST00000423683 1078 ntBASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 PTMAP6-201ENST00000439110 327 ntBASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 PTMAP3-201ENST00000447474 330 ntBASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 AC007998.1-201ENST00000474156 672 ntBASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 PPIAP19-201ENST00000486414 492 ntBASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 SNORD46.2-201ENST00000516021 102 ntBASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 Y_RNA.703-201ENST00000516846 111 ntBASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 RN7SKP258-201ENST00000517151 304 ntBASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 AC144568.1-201ENST00000520139 137 ntBASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 ERHP1-201ENST00000523006 310 ntBASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 AC027369.5-201ENST00000533838 755 ntBASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 CLMN-206ENST00000556441 452 ntTSL 5 BASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 AL355877.2-201ENST00000603670 358 ntBASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 AC006023.2-201ENST00000609916 167 ntBASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 AC132825.6-201ENST00000638861 357 ntBASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC4.84□□□□□ -1.63
HIF3AQ9Y2N7 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
HIF3AQ9Y2N7 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC4.84□□□□□ -1.64
HIF3AQ9Y2N7 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
HIF3AQ9Y2N7 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.64
HIF3AQ9Y2N7 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 RNU6-545P-201ENST00000362681 104 ntBASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 RN7SKP153-201ENST00000365026 316 ntBASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 SNORA16A-201ENST00000384342 137 ntBASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 AL030996.1-201ENST00000411430 235 ntBASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 SDHDP6-201ENST00000414693 480 ntBASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 SRSF1P1-201ENST00000424058 520 ntBASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 RPEP5-201ENST00000441137 268 ntBASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 PPIAP20-201ENST00000449839 135 ntBASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 HMGN2P13-201ENST00000476476 274 ntBASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms