Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 RPL21P16-201ENST00000495531 483 ntBASIC2.65□□□□□ -1.99
USP42Q9H9J4 RAC1P5-201ENST00000512182 576 ntBASIC2.65□□□□□ -1.99
USP42Q9H9J4 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC2.65□□□□□ -1.99
USP42Q9H9J4 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC2.65□□□□□ -1.99
USP42Q9H9J4 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.65□□□□□ -1.99
USP42Q9H9J4 AC233266.2-201ENST00000567067 528 ntBASIC2.65□□□□□ -1.99
USP42Q9H9J4 MIR4498-201ENST00000577599 66 ntBASIC2.65□□□□□ -1.99
USP42Q9H9J4 VN1R88P-201ENST00000596787 292 ntBASIC2.65□□□□□ -1.99
USP42Q9H9J4 DUXAP4-201ENST00000603046 613 ntBASIC2.65□□□□□ -1.99
USP42Q9H9J4 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.64□□□□□ -1.99
USP42Q9H9J4 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
USP42Q9H9J4 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.64□□□□□ -1.99
USP42Q9H9J4 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
USP42Q9H9J4 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
USP42Q9H9J4 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
USP42Q9H9J4 RNU6-77P-201ENST00000410554 91 ntBASIC2.64□□□□□ -1.99
USP42Q9H9J4 AC092447.6-201ENST00000414578 210 ntBASIC2.64□□□□□ -1.99
USP42Q9H9J4 AC005005.2-201ENST00000420779 380 ntBASIC2.64□□□□□ -1.99
USP42Q9H9J4 AL592045.1-201ENST00000429867 352 ntBASIC2.64□□□□□ -1.99
USP42Q9H9J4 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.64□□□□□ -1.99
USP42Q9H9J4 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.64□□□□□ -1.99
USP42Q9H9J4 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.64□□□□□ -1.99
USP42Q9H9J4 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC2.64□□□□□ -1.99
USP42Q9H9J4 RN7SKP210-201ENST00000459176 261 ntBASIC2.64□□□□□ -1.99
USP42Q9H9J4 SCARNA17.1-201ENST00000516211 143 ntBASIC2.64□□□□□ -1.99
USP42Q9H9J4 SCARNA17.2-201ENST00000516334 143 ntBASIC2.64□□□□□ -1.99
USP42Q9H9J4 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
USP42Q9H9J4 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC2.64□□□□□ -1.99
USP42Q9H9J4 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC2.64□□□□□ -1.99
USP42Q9H9J4 AC096586.1-201ENST00000610267 561 ntBASIC2.64□□□□□ -1.99
USP42Q9H9J4 SCARNA17.4-201ENST00000614296 143 ntBASIC2.64□□□□□ -1.99
USP42Q9H9J4 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC2.64□□□□□ -1.99
USP42Q9H9J4 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
USP42Q9H9J4 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC2.63□□□□□ -1.99
USP42Q9H9J4 AC080128.1-201ENST00000474389 1917 ntBASIC2.63□□□□□ -1.99
USP42Q9H9J4 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC2.63□□□□□ -1.99
USP42Q9H9J4 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.63□□□□□ -1.99
USP42Q9H9J4 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.63□□□□□ -1.99
USP42Q9H9J4 ADAM3A-203ENST00000461344 2157 ntBASIC2.63□□□□□ -1.99
USP42Q9H9J4 SNORA1.3-201ENST00000384676 136 ntBASIC2.63□□□□□ -1.99
USP42Q9H9J4 MIR583-201ENST00000384846 75 ntBASIC2.63□□□□□ -1.99
USP42Q9H9J4 AC092638.1-201ENST00000411966 1275 ntBASIC2.63□□□□□ -1.99
USP42Q9H9J4 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.63□□□□□ -1.99
USP42Q9H9J4 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC2.63□□□□□ -1.99
USP42Q9H9J4 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC2.63□□□□□ -1.99
USP42Q9H9J4 AC007000.2-201ENST00000442564 487 ntBASIC2.63□□□□□ -1.99
USP42Q9H9J4 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.63□□□□□ -1.99
USP42Q9H9J4 SNRPGP6-201ENST00000451124 220 ntBASIC2.63□□□□□ -1.99
USP42Q9H9J4 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.63□□□□□ -1.99
USP42Q9H9J4 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC2.63□□□□□ -1.99
USP42Q9H9J4 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC2.63□□□□□ -1.99
USP42Q9H9J4 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC2.63□□□□□ -1.99
USP42Q9H9J4 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC2.63□□□□□ -1.99
USP42Q9H9J4 GLUD1P4-201ENST00000590914 418 ntBASIC2.63□□□□□ -1.99
USP42Q9H9J4 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC2.63□□□□□ -1.99
USP42Q9H9J4 AL133507.1-201ENST00000605269 557 ntBASIC2.63□□□□□ -1.99
USP42Q9H9J4 RPL23AP88-201ENST00000605759 454 ntBASIC2.63□□□□□ -1.99
USP42Q9H9J4 AL391813.2-201ENST00000609113 322 ntBASIC2.63□□□□□ -1.99
USP42Q9H9J4 AC008083.4-201ENST00000615076 444 ntBASIC2.63□□□□□ -1.99
USP42Q9H9J4 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC2.63□□□□□ -1.99
USP42Q9H9J4 YWHAEP7-203ENST00000622054 312 ntBASIC2.63□□□□□ -1.99
USP42Q9H9J4 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.63□□□□□ -1.99
USP42Q9H9J4 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
USP42Q9H9J4 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
USP42Q9H9J4 AC130650.2-201ENST00000618736 2403 ntBASIC2.62□□□□□ -1.99
USP42Q9H9J4 RNU5D-1-201ENST00000363299 116 ntBASIC2.62□□□□□ -1.99
USP42Q9H9J4 AC083799.1-201ENST00000366451 910 ntBASIC2.62□□□□□ -1.99
USP42Q9H9J4 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
USP42Q9H9J4 RNU6-730P-201ENST00000383954 104 ntBASIC2.62□□□□□ -1.99
USP42Q9H9J4 AL023807.1-201ENST00000407932 359 ntBASIC2.62□□□□□ -1.99
USP42Q9H9J4 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.62□□□□□ -1.99
USP42Q9H9J4 RPL19P1-201ENST00000411635 428 ntBASIC2.62□□□□□ -1.99
USP42Q9H9J4 RPL23AP36-201ENST00000413895 458 ntBASIC2.62□□□□□ -1.99
USP42Q9H9J4 SPA17P1-201ENST00000416656 452 ntBASIC2.62□□□□□ -1.99
USP42Q9H9J4 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC2.62□□□□□ -1.99
USP42Q9H9J4 AL589880.1-201ENST00000448271 287 ntBASIC2.62□□□□□ -1.99
USP42Q9H9J4 AC233279.1-201ENST00000455300 423 ntBASIC2.62□□□□□ -1.99
USP42Q9H9J4 UBE2Q2P9-201ENST00000490086 202 ntBASIC2.62□□□□□ -1.99
USP42Q9H9J4 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC2.62□□□□□ -1.99
USP42Q9H9J4 AC011352.3-201ENST00000505162 593 ntBASIC2.62□□□□□ -1.99
USP42Q9H9J4 AC009901.1-201ENST00000506703 541 ntBASIC2.62□□□□□ -1.99
USP42Q9H9J4 AC103833.1-201ENST00000517442 172 ntBASIC2.62□□□□□ -1.99
USP42Q9H9J4 MED28P6-201ENST00000558776 231 ntBASIC2.62□□□□□ -1.99
USP42Q9H9J4 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.62□□□□□ -1.99
USP42Q9H9J4 AC095057.3-201ENST00000567102 1157 ntBASIC2.62□□□□□ -1.99
USP42Q9H9J4 AC103810.1-201ENST00000579873 453 ntBASIC2.62□□□□□ -1.99
USP42Q9H9J4 AC055876.5-201ENST00000605667 259 ntBASIC2.62□□□□□ -1.99
USP42Q9H9J4 AC093673.2-201ENST00000609674 331 ntBASIC2.62□□□□□ -1.99
USP42Q9H9J4 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC2.62□□□□□ -1.99
USP42Q9H9J4 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC2.61□□□□□ -1.99
USP42Q9H9J4 AC012321.1-201ENST00000561622 1588 ntBASIC2.61□□□□□ -1.99
USP42Q9H9J4 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.61□□□□□ -1.99
USP42Q9H9J4 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC2.61□□□□□ -1.99
USP42Q9H9J4 RNU6-173P-201ENST00000364215 104 ntBASIC2.61□□□□□ -1.99
USP42Q9H9J4 SNORD56.5-201ENST00000364281 72 ntBASIC2.61□□□□□ -1.99
USP42Q9H9J4 SNORA17.3-201ENST00000391159 129 ntBASIC2.61□□□□□ -1.99
USP42Q9H9J4 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC2.61□□□□□ -1.99
USP42Q9H9J4 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC2.61□□□□□ -1.99
USP42Q9H9J4 AL590762.3-201ENST00000436372 640 ntBASIC2.61□□□□□ -1.99
USP42Q9H9J4 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC2.61□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 111.7 ms