Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 LINC01109-201ENST00000603837 3081 ntBASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.58□□□□□ -1.68
PTCHD1Q96NR3 AC000123.3-201ENST00000624029 4975 ntBASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 MAPK10-286ENST00000641208 8747 ntBASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 SNORD3E-201ENST00000362899 217 ntBASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 RNU6-1155P-201ENST00000363554 107 ntBASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 Y_RNA.158-201ENST00000363651 101 ntBASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 RNU6-128P-201ENST00000383976 107 ntBASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 SNORA75B-201ENST00000384053 137 ntBASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 RNU6-190P-201ENST00000384154 102 ntBASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 SNORA70E-201ENST00000384492 135 ntBASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 AL583834.1-201ENST00000406943 343 ntBASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 AC018865.2-201ENST00000423631 129 ntBASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 RPL23AP69-201ENST00000431134 458 ntBASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 TEX41-205ENST00000431734 529 ntTSL 4 BASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 AL160004.2-201ENST00000432935 350 ntBASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 AC004866.2-201ENST00000438285 481 ntBASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 NEFMP1-201ENST00000443423 1006 ntBASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 AURKAPS2-201ENST00000454983 333 ntBASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 RN7SL517P-201ENST00000462240 305 ntBASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 AC116337.1-201ENST00000509680 687 ntBASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 AP006245.2-201ENST00000522004 300 ntBASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 AL049839.1-201ENST00000556151 657 ntBASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 MTCO3P23-201ENST00000561363 289 ntBASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 AL359547.2-201ENST00000615810 418 ntBASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 PISRT1.1-201ENST00000616930 107 ntBASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 AC087588.2-201ENST00000617667 426 ntBASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 CR381572.2-201ENST00000624852 397 ntBASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 TANK-205ENST00000405852 2155 ntTSL 5 BASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.57□□□□□ -1.68
PTCHD1Q96NR3 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 AC010300.1-201ENST00000600671 5134 ntBASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 RNA5SP191-201ENST00000362585 102 ntBASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 RNU6-1032P-201ENST00000384100 107 ntBASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 RNU6-890P-201ENST00000384121 107 ntBASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 RNU6-328P-201ENST00000390887 106 ntBASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 AL139039.1-201ENST00000401900 692 ntBASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 RNU6-985P-201ENST00000410182 104 ntBASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 AC114755.2-201ENST00000413520 361 ntBASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 MCFD2P1-201ENST00000417812 300 ntBASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 E2F6P2-201ENST00000420708 748 ntBASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 RPL21P109-201ENST00000422213 475 ntBASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 MTCYBP10-201ENST00000424905 650 ntBASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 AL669831.1-202ENST00000428504 417 ntBASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 BTF3P15-201ENST00000455606 336 ntBASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 AC117503.1-201ENST00000472241 394 ntBASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 RNU6-1332P-201ENST00000516666 104 ntBASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 RNA5SP392-201ENST00000516905 112 ntBASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 COX6CP5-201ENST00000527162 228 ntBASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 AC005868.1-201ENST00000536421 331 ntBASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 MIR3667-201ENST00000581025 74 ntBASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 MIR4503-201ENST00000582187 83 ntBASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 AC007619.2-201ENST00000605743 379 ntBASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 AL022401.1-201ENST00000619498 108 ntBASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 BMS1P21-201ENST00000634565 365 ntBASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 FAM91A3P-201ENST00000456826 2544 ntBASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 SDAD1P1-202ENST00000524156 2051 ntBASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
PTCHD1Q96NR3 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.56□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms