Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 AC116096.1-201ENST00000566804 2314 ntBASIC4.16□□□□□ -1.74
CCDC140Q96MF4 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC140Q96MF4 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC4.15□□□□□ -1.74
CCDC140Q96MF4 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.15□□□□□ -1.74
CCDC140Q96MF4 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
CCDC140Q96MF4 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC4.15□□□□□ -1.74
CCDC140Q96MF4 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC4.15□□□□□ -1.74
CCDC140Q96MF4 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
CCDC140Q96MF4 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC4.15□□□□□ -1.74
CCDC140Q96MF4 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.15□□□□□ -1.74
CCDC140Q96MF4 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.74
CCDC140Q96MF4 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
CCDC140Q96MF4 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
CCDC140Q96MF4 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4.15□□□□□ -1.75
CCDC140Q96MF4 MAX-203ENST00000341653 330 ntTSL 2 BASIC4.15□□□□□ -1.75
CCDC140Q96MF4 RNU6-196P-201ENST00000384315 107 ntBASIC4.15□□□□□ -1.75
CCDC140Q96MF4 SNORA41-201ENST00000384675 132 ntBASIC4.15□□□□□ -1.75
CCDC140Q96MF4 RNU1-77P-201ENST00000390868 162 ntBASIC4.15□□□□□ -1.75
CCDC140Q96MF4 AL513475.1-201ENST00000406602 315 ntBASIC4.15□□□□□ -1.75
CCDC140Q96MF4 RNA5SP129-201ENST00000410276 118 ntBASIC4.15□□□□□ -1.75
CCDC140Q96MF4 SNORD56-201ENST00000413522 71 ntBASIC4.15□□□□□ -1.75
CCDC140Q96MF4 MRPS18CP6-201ENST00000423587 223 ntBASIC4.15□□□□□ -1.75
CCDC140Q96MF4 RPL7AP49-201ENST00000429522 581 ntBASIC4.15□□□□□ -1.75
CCDC140Q96MF4 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
CCDC140Q96MF4 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC4.15□□□□□ -1.75
CCDC140Q96MF4 AL591438.1-201ENST00000433508 581 ntBASIC4.15□□□□□ -1.75
CCDC140Q96MF4 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC4.15□□□□□ -1.75
CCDC140Q96MF4 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC4.15□□□□□ -1.75
CCDC140Q96MF4 AC090602.1-201ENST00000469695 252 ntBASIC4.15□□□□□ -1.75
CCDC140Q96MF4 AC005921.1-201ENST00000510589 286 ntBASIC4.15□□□□□ -1.75
CCDC140Q96MF4 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
CCDC140Q96MF4 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC4.15□□□□□ -1.75
CCDC140Q96MF4 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC4.15□□□□□ -1.75
CCDC140Q96MF4 HMGB1P40-201ENST00000525121 540 ntBASIC4.15□□□□□ -1.75
CCDC140Q96MF4 COX6CP5-201ENST00000527162 228 ntBASIC4.15□□□□□ -1.75
CCDC140Q96MF4 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.15□□□□□ -1.75
CCDC140Q96MF4 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.15□□□□□ -1.75
CCDC140Q96MF4 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC4.15□□□□□ -1.75
CCDC140Q96MF4 AC103996.1-201ENST00000555468 102 ntBASIC4.15□□□□□ -1.75
CCDC140Q96MF4 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC4.15□□□□□ -1.75
CCDC140Q96MF4 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC4.15□□□□□ -1.75
CCDC140Q96MF4 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.15□□□□□ -1.75
CCDC140Q96MF4 RN7SL290P-201ENST00000578661 300 ntBASIC4.15□□□□□ -1.75
CCDC140Q96MF4 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC4.15□□□□□ -1.75
CCDC140Q96MF4 AC008121.1-201ENST00000603244 268 ntBASIC4.15□□□□□ -1.75
CCDC140Q96MF4 AL121655.1-201ENST00000605811 308 ntBASIC4.15□□□□□ -1.75
CCDC140Q96MF4 UBE2Q2P6-201ENST00000612666 153 ntBASIC4.15□□□□□ -1.75
CCDC140Q96MF4 AC138627.2-201ENST00000624202 601 ntBASIC4.15□□□□□ -1.75
CCDC140Q96MF4 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
CCDC140Q96MF4 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
CCDC140Q96MF4 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
CCDC140Q96MF4 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
CCDC140Q96MF4 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
CCDC140Q96MF4 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC4.15□□□□□ -1.75
CCDC140Q96MF4 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC4.15□□□□□ -1.75
CCDC140Q96MF4 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
CCDC140Q96MF4 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.15□□□□□ -1.75
CCDC140Q96MF4 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC4.15□□□□□ -1.75
CCDC140Q96MF4 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC4.15□□□□□ -1.75
CCDC140Q96MF4 AP001029.2-203ENST00000589795 4910 ntBASIC4.15□□□□□ -1.75
CCDC140Q96MF4 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
CCDC140Q96MF4 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.75
CCDC140Q96MF4 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.75
CCDC140Q96MF4 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC4.15□□□□□ -1.75
CCDC140Q96MF4 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC4.15□□□□□ -1.75
CCDC140Q96MF4 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC4.15□□□□□ -1.75
CCDC140Q96MF4 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.75
CCDC140Q96MF4 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC4.14□□□□□ -1.75
CCDC140Q96MF4 AC100778.3-201ENST00000580060 1750 ntBASIC4.14□□□□□ -1.75
CCDC140Q96MF4 MARK2P15-201ENST00000432204 2186 ntBASIC4.14□□□□□ -1.75
CCDC140Q96MF4 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC4.14□□□□□ -1.75
CCDC140Q96MF4 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC140Q96MF4 ERVFRD-3-201ENST00000578561 1617 ntBASIC4.14□□□□□ -1.75
CCDC140Q96MF4 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC140Q96MF4 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC140Q96MF4 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC140Q96MF4 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC140Q96MF4 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC140Q96MF4 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC140Q96MF4 AC007685.1-201ENST00000329806 452 ntBASIC4.14□□□□□ -1.75
CCDC140Q96MF4 RNA5SP132-201ENST00000364725 118 ntBASIC4.14□□□□□ -1.75
CCDC140Q96MF4 RNA5SP189-201ENST00000364920 115 ntBASIC4.14□□□□□ -1.75
CCDC140Q96MF4 Y_RNA.314-201ENST00000365114 102 ntBASIC4.14□□□□□ -1.75
CCDC140Q96MF4 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC4.14□□□□□ -1.75
CCDC140Q96MF4 MIR521-1-201ENST00000384902 87 ntBASIC4.14□□□□□ -1.75
CCDC140Q96MF4 RNA5SP339-201ENST00000390987 122 ntBASIC4.14□□□□□ -1.75
CCDC140Q96MF4 RNU6-1197P-201ENST00000391183 107 ntBASIC4.14□□□□□ -1.75
CCDC140Q96MF4 U3.25-201ENST00000391209 220 ntBASIC4.14□□□□□ -1.75
CCDC140Q96MF4 RNA5SP241-201ENST00000391326 114 ntBASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 148.3 ms