Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.1□□□□□ -1.75
VRK3Q8IV63 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VRK3Q8IV63 AP004289.2-201ENST00000444413 1457 ntBASIC4.1□□□□□ -1.75
VRK3Q8IV63 AC066616.2-201ENST00000559334 1481 ntBASIC4.1□□□□□ -1.75
VRK3Q8IV63 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.1□□□□□ -1.75
VRK3Q8IV63 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.1□□□□□ -1.75
VRK3Q8IV63 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC4.1□□□□□ -1.75
VRK3Q8IV63 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
VRK3Q8IV63 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
VRK3Q8IV63 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
VRK3Q8IV63 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
VRK3Q8IV63 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
VRK3Q8IV63 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
VRK3Q8IV63 AC011460.1-201ENST00000636268 1834 ntBASIC4.09□□□□□ -1.75
VRK3Q8IV63 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.09□□□□□ -1.75
VRK3Q8IV63 AC092079.1-201ENST00000558620 1985 ntBASIC4.09□□□□□ -1.75
VRK3Q8IV63 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.09□□□□□ -1.75
VRK3Q8IV63 OR1S2-201ENST00000302592 978 ntBASIC4.09□□□□□ -1.75
VRK3Q8IV63 Y_RNA.31-201ENST00000362574 102 ntBASIC4.09□□□□□ -1.75
VRK3Q8IV63 Y_RNA.234-201ENST00000364409 97 ntBASIC4.09□□□□□ -1.75
VRK3Q8IV63 MIR558-201ENST00000384920 94 ntBASIC4.09□□□□□ -1.75
VRK3Q8IV63 MIR548K-201ENST00000408406 116 ntBASIC4.09□□□□□ -1.75
VRK3Q8IV63 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC4.09□□□□□ -1.75
VRK3Q8IV63 AC234779.1-201ENST00000425910 285 ntBASIC4.09□□□□□ -1.75
VRK3Q8IV63 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC4.09□□□□□ -1.75
VRK3Q8IV63 RPL23AP89-201ENST00000439324 255 ntBASIC4.09□□□□□ -1.75
VRK3Q8IV63 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC4.09□□□□□ -1.75
VRK3Q8IV63 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC4.09□□□□□ -1.75
VRK3Q8IV63 HMGB3P22-202ENST00000451823 572 ntBASIC4.09□□□□□ -1.75
VRK3Q8IV63 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC4.09□□□□□ -1.75
VRK3Q8IV63 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC4.09□□□□□ -1.75
VRK3Q8IV63 RNU7-66P-201ENST00000459469 62 ntBASIC4.09□□□□□ -1.75
VRK3Q8IV63 RPS4XP10-201ENST00000465034 731 ntBASIC4.09□□□□□ -1.75
VRK3Q8IV63 AC010618.1-201ENST00000469924 477 ntBASIC4.09□□□□□ -1.75
VRK3Q8IV63 RPL21P99-201ENST00000480369 423 ntBASIC4.09□□□□□ -1.75
VRK3Q8IV63 AC108043.1-201ENST00000512696 574 ntBASIC4.09□□□□□ -1.75
VRK3Q8IV63 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC4.09□□□□□ -1.75
VRK3Q8IV63 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC4.09□□□□□ -1.75
VRK3Q8IV63 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC4.09□□□□□ -1.75
VRK3Q8IV63 AP003730.1-201ENST00000524605 285 ntBASIC4.09□□□□□ -1.75
VRK3Q8IV63 COPS8P3-201ENST00000526024 482 ntBASIC4.09□□□□□ -1.75
VRK3Q8IV63 AP003497.1-201ENST00000528472 562 ntBASIC4.09□□□□□ -1.75
VRK3Q8IV63 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.09□□□□□ -1.75
VRK3Q8IV63 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.09□□□□□ -1.75
VRK3Q8IV63 MGST1-215ENST00000540056 546 ntTSL 3 BASIC4.09□□□□□ -1.75
VRK3Q8IV63 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC4.09□□□□□ -1.75
VRK3Q8IV63 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC4.09□□□□□ -1.75
VRK3Q8IV63 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC4.09□□□□□ -1.75
VRK3Q8IV63 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC4.09□□□□□ -1.75
VRK3Q8IV63 AC018552.3-201ENST00000567416 561 ntBASIC4.09□□□□□ -1.75
VRK3Q8IV63 CYP4A43P-201ENST00000568156 121 ntBASIC4.09□□□□□ -1.75
VRK3Q8IV63 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC4.09□□□□□ -1.75
VRK3Q8IV63 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC4.09□□□□□ -1.75
VRK3Q8IV63 RN7SL600P-201ENST00000581811 299 ntBASIC4.09□□□□□ -1.75
VRK3Q8IV63 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.09□□□□□ -1.75
VRK3Q8IV63 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC4.09□□□□□ -1.75
VRK3Q8IV63 VN1R107P-201ENST00000601784 209 ntBASIC4.09□□□□□ -1.75
VRK3Q8IV63 AL022099.1-201ENST00000604551 712 ntBASIC4.09□□□□□ -1.75
VRK3Q8IV63 APOOP1-201ENST00000604695 592 ntBASIC4.09□□□□□ -1.75
VRK3Q8IV63 AL121992.2-201ENST00000606262 256 ntBASIC4.09□□□□□ -1.75
VRK3Q8IV63 AC004908.2-201ENST00000609090 574 ntBASIC4.09□□□□□ -1.75
VRK3Q8IV63 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC4.09□□□□□ -1.75
VRK3Q8IV63 uc_338.22-201ENST00000622722 187 ntBASIC4.09□□□□□ -1.75
VRK3Q8IV63 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC4.09□□□□□ -1.75
VRK3Q8IV63 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
VRK3Q8IV63 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
VRK3Q8IV63 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
VRK3Q8IV63 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC4.09□□□□□ -1.76
VRK3Q8IV63 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
VRK3Q8IV63 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC4.09□□□□□ -1.76
VRK3Q8IV63 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
VRK3Q8IV63 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.09□□□□□ -1.76
VRK3Q8IV63 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.76
VRK3Q8IV63 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.76
VRK3Q8IV63 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.76
VRK3Q8IV63 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.08□□□□□ -1.76
VRK3Q8IV63 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.08□□□□□ -1.76
VRK3Q8IV63 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
VRK3Q8IV63 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.08□□□□□ -1.76
VRK3Q8IV63 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
VRK3Q8IV63 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
VRK3Q8IV63 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
VRK3Q8IV63 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC4.08□□□□□ -1.76
VRK3Q8IV63 MIR448-201ENST00000362131 111 ntBASIC4.08□□□□□ -1.76
VRK3Q8IV63 Y_RNA.28-201ENST00000362554 111 ntBASIC4.08□□□□□ -1.76
VRK3Q8IV63 RNA5SP258-201ENST00000362750 119 ntBASIC4.08□□□□□ -1.76
VRK3Q8IV63 Y_RNA.167-201ENST00000363735 109 ntBASIC4.08□□□□□ -1.76
VRK3Q8IV63 Y_RNA.187-201ENST00000363918 113 ntBASIC4.08□□□□□ -1.76
VRK3Q8IV63 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
VRK3Q8IV63 AC068538.1-201ENST00000376856 336 ntBASIC4.08□□□□□ -1.76
VRK3Q8IV63 Y_RNA.414-201ENST00000384011 101 ntBASIC4.08□□□□□ -1.76
VRK3Q8IV63 RNU6-574P-201ENST00000384265 107 ntBASIC4.08□□□□□ -1.76
VRK3Q8IV63 Y_RNA.530-201ENST00000384587 101 ntBASIC4.08□□□□□ -1.76
VRK3Q8IV63 RNU6-331P-201ENST00000384724 107 ntBASIC4.08□□□□□ -1.76
VRK3Q8IV63 U3.20-201ENST00000390909 217 ntBASIC4.08□□□□□ -1.76
VRK3Q8IV63 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
VRK3Q8IV63 AL356057.3-201ENST00000402607 340 ntBASIC4.08□□□□□ -1.76
VRK3Q8IV63 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC4.08□□□□□ -1.76
VRK3Q8IV63 RPL23AP38-201ENST00000423801 469 ntBASIC4.08□□□□□ -1.76
VRK3Q8IV63 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 136.1 ms