Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC4.13□□□□□ -1.75
COL4A3Q01955 AC007151.1-201ENST00000572774 483 ntBASIC4.13□□□□□ -1.75
COL4A3Q01955 MIR5195-201ENST00000583555 115 ntBASIC4.13□□□□□ -1.75
COL4A3Q01955 AP001029.3-201ENST00000588063 596 ntBASIC4.13□□□□□ -1.75
COL4A3Q01955 AC004908.2-201ENST00000609090 574 ntBASIC4.13□□□□□ -1.75
COL4A3Q01955 MIR6715A-201ENST00000615929 79 ntBASIC4.13□□□□□ -1.75
COL4A3Q01955 SCARNA15.3-201ENST00000626315 122 ntBASIC4.13□□□□□ -1.75
COL4A3Q01955 SCARNA4.1-201ENST00000628597 123 ntBASIC4.13□□□□□ -1.75
COL4A3Q01955 AL133216.2-202ENST00000634512 349 ntBASIC4.13□□□□□ -1.75
COL4A3Q01955 AC097714.1-201ENST00000511272 1647 ntBASIC4.13□□□□□ -1.75
COL4A3Q01955 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL4A3Q01955 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC4.13□□□□□ -1.75
COL4A3Q01955 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
COL4A3Q01955 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.13□□□□□ -1.75
COL4A3Q01955 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC4.13□□□□□ -1.75
COL4A3Q01955 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
COL4A3Q01955 Y_RNA.100-201ENST00000363141 102 ntBASIC4.13□□□□□ -1.75
COL4A3Q01955 RNU4-66P-201ENST00000365199 138 ntBASIC4.13□□□□□ -1.75
COL4A3Q01955 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL4A3Q01955 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC4.13□□□□□ -1.75
COL4A3Q01955 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
COL4A3Q01955 RNU6-1207P-201ENST00000384343 107 ntBASIC4.13□□□□□ -1.75
COL4A3Q01955 OR1AA1P-201ENST00000419597 916 ntBASIC4.13□□□□□ -1.75
COL4A3Q01955 RPS20P5-201ENST00000434808 360 ntBASIC4.13□□□□□ -1.75
COL4A3Q01955 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC4.13□□□□□ -1.75
COL4A3Q01955 RPL12P46-201ENST00000436610 195 ntBASIC4.13□□□□□ -1.75
COL4A3Q01955 AC115115.1-201ENST00000449927 248 ntBASIC4.13□□□□□ -1.75
COL4A3Q01955 RPL23AP65-201ENST00000475608 468 ntBASIC4.13□□□□□ -1.75
COL4A3Q01955 AC005912.1-201ENST00000495392 255 ntBASIC4.13□□□□□ -1.75
COL4A3Q01955 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC4.13□□□□□ -1.75
COL4A3Q01955 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.13□□□□□ -1.75
COL4A3Q01955 RNU1-95P-201ENST00000516357 160 ntBASIC4.13□□□□□ -1.75
COL4A3Q01955 SCARNA24.1-201ENST00000516465 137 ntBASIC4.13□□□□□ -1.75
COL4A3Q01955 RNU1-128P-201ENST00000516704 160 ntBASIC4.13□□□□□ -1.75
COL4A3Q01955 RNA5SP179-201ENST00000517284 121 ntBASIC4.13□□□□□ -1.75
COL4A3Q01955 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC4.13□□□□□ -1.75
COL4A3Q01955 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.13□□□□□ -1.75
COL4A3Q01955 FRG2DP-202ENST00000566967 323 ntBASIC4.13□□□□□ -1.75
COL4A3Q01955 AC068790.3-201ENST00000602988 553 ntBASIC4.13□□□□□ -1.75
COL4A3Q01955 MIR432-201ENST00000606207 94 ntBASIC4.13□□□□□ -1.75
COL4A3Q01955 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC4.13□□□□□ -1.75
COL4A3Q01955 OR6R2P-201ENST00000609216 300 ntBASIC4.13□□□□□ -1.75
COL4A3Q01955 RNU6ATAC35P-201ENST00000609276 444 ntBASIC4.13□□□□□ -1.75
COL4A3Q01955 AC040168.1-201ENST00000623594 991 ntBASIC4.13□□□□□ -1.75
COL4A3Q01955 PCNP-208ENST00000627393 136 ntTSL 2 BASIC4.13□□□□□ -1.75
COL4A3Q01955 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC4.13□□□□□ -1.75
COL4A3Q01955 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL4A3Q01955 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
COL4A3Q01955 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL4A3Q01955 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
COL4A3Q01955 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL4A3Q01955 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL4A3Q01955 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL4A3Q01955 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
COL4A3Q01955 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
COL4A3Q01955 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
COL4A3Q01955 RNU4-26P-201ENST00000410270 107 ntBASIC4.12□□□□□ -1.75
COL4A3Q01955 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC4.12□□□□□ -1.75
COL4A3Q01955 RPL31P45-201ENST00000419532 356 ntBASIC4.12□□□□□ -1.75
COL4A3Q01955 AP000907.1-201ENST00000428428 510 ntBASIC4.12□□□□□ -1.75
COL4A3Q01955 AL590233.1-201ENST00000430017 456 ntBASIC4.12□□□□□ -1.75
COL4A3Q01955 RPL36P19-201ENST00000430744 301 ntBASIC4.12□□□□□ -1.75
COL4A3Q01955 UBE2V1P13-201ENST00000436983 439 ntBASIC4.12□□□□□ -1.75
COL4A3Q01955 AC073415.1-201ENST00000449240 153 ntBASIC4.12□□□□□ -1.75
COL4A3Q01955 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC4.12□□□□□ -1.75
COL4A3Q01955 AP001992.1-205ENST00000462248 379 ntBASIC4.12□□□□□ -1.75
COL4A3Q01955 AC008155.2-201ENST00000464337 397 ntBASIC4.12□□□□□ -1.75
COL4A3Q01955 RPS26P28-201ENST00000470806 348 ntBASIC4.12□□□□□ -1.75
COL4A3Q01955 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC4.12□□□□□ -1.75
COL4A3Q01955 AC091885.1-201ENST00000506658 268 ntBASIC4.12□□□□□ -1.75
COL4A3Q01955 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC4.12□□□□□ -1.75
COL4A3Q01955 RNU6-559P-201ENST00000516151 98 ntBASIC4.12□□□□□ -1.75
COL4A3Q01955 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC4.12□□□□□ -1.75
COL4A3Q01955 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.12□□□□□ -1.75
COL4A3Q01955 NCAPGP2-201ENST00000557911 754 ntBASIC4.12□□□□□ -1.75
COL4A3Q01955 AC005255.1-201ENST00000593748 216 ntBASIC4.12□□□□□ -1.75
COL4A3Q01955 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.12□□□□□ -1.75
COL4A3Q01955 AL080274.1-201ENST00000605565 220 ntBASIC4.12□□□□□ -1.75
COL4A3Q01955 AL031666.3-201ENST00000609320 1006 ntBASIC4.12□□□□□ -1.75
COL4A3Q01955 uc_338.15-201ENST00000615470 191 ntBASIC4.12□□□□□ -1.75
COL4A3Q01955 MIR7154-201ENST00000620673 73 ntBASIC4.12□□□□□ -1.75
COL4A3Q01955 MIR3651-201ENST00000630427 90 ntBASIC4.12□□□□□ -1.75
COL4A3Q01955 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL4A3Q01955 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC4.12□□□□□ -1.75
COL4A3Q01955 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
COL4A3Q01955 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL4A3Q01955 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL4A3Q01955 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC4.11□□□□□ -1.75
COL4A3Q01955 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
COL4A3Q01955 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL4A3Q01955 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL4A3Q01955 Y_RNA.144-201ENST00000363521 113 ntBASIC4.11□□□□□ -1.75
COL4A3Q01955 Y_RNA.231-201ENST00000364358 102 ntBASIC4.11□□□□□ -1.75
COL4A3Q01955 RNU6-831P-201ENST00000384548 107 ntBASIC4.11□□□□□ -1.75
COL4A3Q01955 RPL21P17-201ENST00000397467 475 ntBASIC4.11□□□□□ -1.75
COL4A3Q01955 RNA5SP146-201ENST00000410743 123 ntBASIC4.11□□□□□ -1.75
COL4A3Q01955 RNU2-62P-201ENST00000410868 191 ntBASIC4.11□□□□□ -1.75
COL4A3Q01955 RPS23P10-201ENST00000416185 486 ntBASIC4.11□□□□□ -1.75
COL4A3Q01955 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.11□□□□□ -1.75
COL4A3Q01955 AC012065.2-201ENST00000421295 375 ntBASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 92.8 ms