Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC6.05□□□□□ -1.44
COL9A1P20849 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL9A1P20849 LINC01776-201ENST00000418344 2229 ntTSL 2 BASIC6.05□□□□□ -1.44
COL9A1P20849 PIK3CB-201ENST00000289153 5919 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL9A1P20849 AC107980.1-201ENST00000558671 3355 ntBASIC6.04□□□□□ -1.44
COL9A1P20849 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC6.04□□□□□ -1.44
COL9A1P20849 ST6GAL1-211ENST00000448044 4302 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL9A1P20849 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL9A1P20849 SGK3-201ENST00000345714 4055 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL9A1P20849 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC6.04□□□□□ -1.44
COL9A1P20849 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL9A1P20849 SNORD14B-201ENST00000364533 90 ntBASIC6.04□□□□□ -1.44
COL9A1P20849 AL359837.1-201ENST00000381357 287 ntBASIC6.04□□□□□ -1.44
COL9A1P20849 Y_RNA.563-201ENST00000384707 108 ntBASIC6.04□□□□□ -1.44
COL9A1P20849 RNA5SP213-201ENST00000391031 106 ntBASIC6.04□□□□□ -1.44
COL9A1P20849 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC6.04□□□□□ -1.44
COL9A1P20849 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC6.04□□□□□ -1.44
COL9A1P20849 AC012158.1-204ENST00000483430 465 ntBASIC6.04□□□□□ -1.44
COL9A1P20849 RNU6-377P-201ENST00000515965 102 ntBASIC6.04□□□□□ -1.44
COL9A1P20849 RN7SKP277-201ENST00000516895 283 ntBASIC6.04□□□□□ -1.44
COL9A1P20849 AC008694.2-201ENST00000517591 306 ntBASIC6.04□□□□□ -1.44
COL9A1P20849 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC6.04□□□□□ -1.44
COL9A1P20849 HMGN2P47-201ENST00000559378 272 ntBASIC6.04□□□□□ -1.44
COL9A1P20849 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC6.04□□□□□ -1.44
COL9A1P20849 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC6.04□□□□□ -1.44
COL9A1P20849 AC020765.1-201ENST00000604296 328 ntBASIC6.04□□□□□ -1.44
COL9A1P20849 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC6.04□□□□□ -1.44
COL9A1P20849 snoU18.1-201ENST00000629629 71 ntBASIC6.04□□□□□ -1.44
COL9A1P20849 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC6.04□□□□□ -1.44
COL9A1P20849 TXNRD1-205ENST00000503506 3930 ntAPPRIS P2 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL9A1P20849 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC6.04□□□□□ -1.44
COL9A1P20849 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL9A1P20849 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
COL9A1P20849 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
COL9A1P20849 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL9A1P20849 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL9A1P20849 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL9A1P20849 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
COL9A1P20849 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
COL9A1P20849 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
COL9A1P20849 TMED10-201ENST00000303575 4127 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL9A1P20849 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL9A1P20849 NPHP1-203ENST00000393272 2752 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
COL9A1P20849 AC007842.1-201ENST00000597336 2039 ntBASIC6.03□□□□□ -1.44
COL9A1P20849 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC6.03□□□□□ -1.44
COL9A1P20849 AC005618.1-201ENST00000606901 3148 ntBASIC6.03□□□□□ -1.44
COL9A1P20849 RNU6-428P-201ENST00000362942 107 ntBASIC6.03□□□□□ -1.44
COL9A1P20849 RNA5SP234-201ENST00000363916 119 ntBASIC6.03□□□□□ -1.44
COL9A1P20849 MIR153-2-201ENST00000385225 87 ntBASIC6.03□□□□□ -1.44
COL9A1P20849 RNY4P18-201ENST00000391107 89 ntBASIC6.03□□□□□ -1.44
COL9A1P20849 SSXP9-201ENST00000417503 292 ntBASIC6.03□□□□□ -1.44
COL9A1P20849 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC6.03□□□□□ -1.44
COL9A1P20849 AC068287.1-201ENST00000430283 295 ntBASIC6.03□□□□□ -1.44
COL9A1P20849 CYCSP6-201ENST00000434498 302 ntBASIC6.03□□□□□ -1.44
COL9A1P20849 RPL23AP58-201ENST00000440453 469 ntBASIC6.03□□□□□ -1.44
COL9A1P20849 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC6.03□□□□□ -1.44
COL9A1P20849 RPL21P13-201ENST00000488305 481 ntBASIC6.03□□□□□ -1.44
COL9A1P20849 RPL23AP75-201ENST00000491601 451 ntBASIC6.03□□□□□ -1.44
COL9A1P20849 SNORA25.12-201ENST00000516202 82 ntBASIC6.03□□□□□ -1.44
COL9A1P20849 SNORA31.22-201ENST00000517204 135 ntBASIC6.03□□□□□ -1.44
COL9A1P20849 AC024940.3-201ENST00000538551 316 ntBASIC6.03□□□□□ -1.44
COL9A1P20849 AC034105.4-201ENST00000568304 277 ntBASIC6.03□□□□□ -1.44
COL9A1P20849 KLKP1-201ENST00000595979 403 ntBASIC6.03□□□□□ -1.44
COL9A1P20849 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC6.03□□□□□ -1.44
COL9A1P20849 TUG1_4.1-201ENST00000619464 181 ntBASIC6.03□□□□□ -1.44
COL9A1P20849 STXBP5-201ENST00000321680 3456 ntAPPRIS ALT1 TSL 5 BASIC6.03□□□□□ -1.44
COL9A1P20849 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC6.03□□□□□ -1.44
COL9A1P20849 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL9A1P20849 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC6.03□□□□□ -1.44
COL9A1P20849 AC009229.4-201ENST00000623854 1947 ntBASIC6.03□□□□□ -1.44
COL9A1P20849 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC6.03□□□□□ -1.44
COL9A1P20849 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
COL9A1P20849 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL9A1P20849 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
COL9A1P20849 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
COL9A1P20849 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC6.02□□□□□ -1.45
COL9A1P20849 SAMMSON-226ENST00000642089 1582 ntBASIC6.02□□□□□ -1.45
COL9A1P20849 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC6.02□□□□□ -1.45
COL9A1P20849 ALPK2-201ENST00000361673 7303 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
COL9A1P20849 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC6.02□□□□□ -1.45
COL9A1P20849 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
COL9A1P20849 PARP4P2-201ENST00000446672 3326 ntBASIC6.02□□□□□ -1.45
COL9A1P20849 RNU4-17P-201ENST00000365598 141 ntBASIC6.02□□□□□ -1.45
COL9A1P20849 RNU6-741P-201ENST00000383889 107 ntBASIC6.02□□□□□ -1.45
COL9A1P20849 RPL36P18-201ENST00000419316 318 ntBASIC6.02□□□□□ -1.45
COL9A1P20849 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC6.02□□□□□ -1.45
COL9A1P20849 AL627311.1-201ENST00000431514 115 ntBASIC6.02□□□□□ -1.45
COL9A1P20849 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC6.02□□□□□ -1.45
COL9A1P20849 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC6.02□□□□□ -1.45
COL9A1P20849 RN7SL51P-201ENST00000468230 285 ntBASIC6.02□□□□□ -1.45
COL9A1P20849 RN7SKP21-201ENST00000516503 220 ntBASIC6.02□□□□□ -1.45
COL9A1P20849 AC084851.1-201ENST00000529105 249 ntBASIC6.02□□□□□ -1.45
COL9A1P20849 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
COL9A1P20849 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC6.02□□□□□ -1.45
COL9A1P20849 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC6.02□□□□□ -1.45
COL9A1P20849 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC6.02□□□□□ -1.45
COL9A1P20849 uc_338.26-201ENST00000612659 160 ntBASIC6.02□□□□□ -1.45
COL9A1P20849 AC130448.2-201ENST00000624082 374 ntBASIC6.02□□□□□ -1.45
COL9A1P20849 AC068724.3-201ENST00000625906 87 ntBASIC6.02□□□□□ -1.45
COL9A1P20849 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC6.02□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 118.7 ms