Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC5.9□□□□□ -1.46
LIMD1Q9UGP4 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC5.9□□□□□ -1.46
LIMD1Q9UGP4 SSX9-202ENST00000608568 580 ntTSL 4 BASIC5.9□□□□□ -1.46
LIMD1Q9UGP4 AC126915.2-201ENST00000610957 190 ntBASIC5.9□□□□□ -1.46
LIMD1Q9UGP4 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC5.9□□□□□ -1.46
LIMD1Q9UGP4 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC5.9□□□□□ -1.46
LIMD1Q9UGP4 THAP12P9-201ENST00000503971 2360 ntBASIC5.9□□□□□ -1.46
LIMD1Q9UGP4 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.47
LIMD1Q9UGP4 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
LIMD1Q9UGP4 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
LIMD1Q9UGP4 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.9□□□□□ -1.47
LIMD1Q9UGP4 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
LIMD1Q9UGP4 AC232271.1-201ENST00000602455 2715 ntBASIC5.9□□□□□ -1.47
LIMD1Q9UGP4 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 AC097063.1-201ENST00000426714 1797 ntBASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 AC020656.2-201ENST00000613291 5309 ntBASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 RNU6-1167P-201ENST00000363227 94 ntBASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 RNU6-512P-201ENST00000364438 103 ntBASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 RNU6-1074P-201ENST00000383995 104 ntBASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 Y_RNA.462-201ENST00000384268 102 ntBASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 AL080315.1-201ENST00000406055 466 ntBASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 RNU6-121P-201ENST00000410525 99 ntBASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 RNU6-130P-201ENST00000411112 103 ntBASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 AC087650.1-201ENST00000431445 468 ntBASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 AL138752.1-201ENST00000452964 351 ntBASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 AC109479.2-201ENST00000517842 174 ntBASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 AC126177.5-201ENST00000549599 178 ntBASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 AC098826.3-201ENST00000603823 466 ntBASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 AC006077.1-201ENST00000604746 343 ntBASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 AC010201.1-201ENST00000605051 540 ntBASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 BX284668.6-201ENST00000606899 438 ntBASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 AL731566.2-201ENST00000618971 317 ntBASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 AC004076.2-201ENST00000620532 3323 ntBASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 AC087516.1-201ENST00000561236 2428 ntBASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.89□□□□□ -1.47
LIMD1Q9UGP4 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 STK3-216ENST00000523601 3107 ntTSL 2 BASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 AC007685.1-201ENST00000329806 452 ntBASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 RNU6-37P-201ENST00000362692 107 ntBASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 Y_RNA.105-201ENST00000363182 111 ntBASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 RNU6-173P-201ENST00000364215 104 ntBASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 RNU6-11P-201ENST00000364234 107 ntBASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 RNU6-7-201ENST00000364784 107 ntBASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 RNU6-8-201ENST00000365467 107 ntBASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 RNU6-25P-201ENST00000383873 107 ntBASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 RNU6-1-201ENST00000383898 107 ntBASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 RNU6-48P-201ENST00000384161 107 ntBASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 RNU6-36P-201ENST00000384172 107 ntBASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 RNU6-4P-201ENST00000384205 107 ntBASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 RNU6-5P-201ENST00000384238 107 ntBASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 RNU6-3P-201ENST00000384314 107 ntBASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 RNU6-16P-201ENST00000384385 107 ntBASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 RNU6-15P-201ENST00000384534 107 ntBASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 RNU6-2-201ENST00000384627 107 ntBASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 Y_RNA.539-201ENST00000384635 107 ntBASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 RNU6-29P-201ENST00000384637 107 ntBASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 RNU6-9-201ENST00000384776 107 ntBASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 SNORD58.1-201ENST00000391313 66 ntBASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 RNU6-1025P-201ENST00000410629 104 ntBASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 SNORD56-201ENST00000413522 71 ntBASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 AL158156.1-201ENST00000422509 473 ntBASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 AC092017.2-201ENST00000427600 362 ntBASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 RNU1-88P-201ENST00000459274 128 ntBASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 AL590705.4-201ENST00000532209 134 ntBASIC5.88□□□□□ -1.47
LIMD1Q9UGP4 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms