Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC6.32□□□□□ -1.4
NKX2-3Q8TAU0 MTCO1P5-201ENST00000433573 344 ntBASIC6.32□□□□□ -1.4
NKX2-3Q8TAU0 AC138761.5-201ENST00000433967 325 ntBASIC6.32□□□□□ -1.4
NKX2-3Q8TAU0 AL162725.1-201ENST00000435405 301 ntBASIC6.32□□□□□ -1.4
NKX2-3Q8TAU0 RPS26P56-201ENST00000444468 240 ntBASIC6.32□□□□□ -1.4
NKX2-3Q8TAU0 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC6.32□□□□□ -1.4
NKX2-3Q8TAU0 RN7SL385P-201ENST00000468873 276 ntBASIC6.32□□□□□ -1.4
NKX2-3Q8TAU0 AC092754.1-201ENST00000472975 479 ntBASIC6.32□□□□□ -1.4
NKX2-3Q8TAU0 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC6.32□□□□□ -1.4
NKX2-3Q8TAU0 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
NKX2-3Q8TAU0 AC007016.1-201ENST00000512110 244 ntBASIC6.32□□□□□ -1.4
NKX2-3Q8TAU0 RNU6-798P-201ENST00000516912 103 ntBASIC6.32□□□□□ -1.4
NKX2-3Q8TAU0 AC091144.1-201ENST00000519573 138 ntBASIC6.32□□□□□ -1.4
NKX2-3Q8TAU0 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC6.32□□□□□ -1.4
NKX2-3Q8TAU0 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC6.32□□□□□ -1.4
NKX2-3Q8TAU0 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC6.32□□□□□ -1.4
NKX2-3Q8TAU0 AL139124.1-201ENST00000609123 421 ntBASIC6.32□□□□□ -1.4
NKX2-3Q8TAU0 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC6.32□□□□□ -1.4
NKX2-3Q8TAU0 AC034102.8-201ENST00000615146 484 ntBASIC6.32□□□□□ -1.4
NKX2-3Q8TAU0 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC6.32□□□□□ -1.4
NKX2-3Q8TAU0 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC6.32□□□□□ -1.4
NKX2-3Q8TAU0 AL596275.2-204ENST00000641628 552 ntBASIC6.32□□□□□ -1.4
NKX2-3Q8TAU0 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
NKX2-3Q8TAU0 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
NKX2-3Q8TAU0 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
NKX2-3Q8TAU0 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC6.32□□□□□ -1.4
NKX2-3Q8TAU0 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC6.32□□□□□ -1.4
NKX2-3Q8TAU0 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC6.32□□□□□ -1.4
NKX2-3Q8TAU0 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 AC007785.2-201ENST00000598627 1916 ntBASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 AC116667.1-201ENST00000604855 2072 ntBASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 Y_RNA.44-201ENST00000362676 108 ntBASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 RNU4-44P-201ENST00000363050 141 ntBASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 Y_RNA.480-201ENST00000384364 102 ntBASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 RNU6-790P-201ENST00000384479 105 ntBASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 RNU6-658P-201ENST00000384606 106 ntBASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 RNU11-201ENST00000387069 134 ntBASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 DUTP5-201ENST00000406790 469 ntBASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 U3.42-201ENST00000408746 214 ntBASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 BX276092.6-201ENST00000430476 250 ntBASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 AC092162.1-201ENST00000432828 434 ntBASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 PPIAP3-201ENST00000450588 505 ntBASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 BX276092.8-201ENST00000455722 250 ntBASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 AC091180.1-201ENST00000462104 372 ntBASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 AC140059.1-201ENST00000489238 361 ntBASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 AC092490.3-201ENST00000545370 572 ntBASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 HMGN2P47-201ENST00000559378 272 ntBASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 AL360012.1-201ENST00000602813 131 ntBASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 AL160281.1-201ENST00000605307 311 ntBASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 AL121917.1-203ENST00000605534 577 ntBASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 AC020656.2-201ENST00000613291 5309 ntBASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC6.31□□□□□ -1.4
NKX2-3Q8TAU0 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC6.3□□□□□ -1.4
NKX2-3Q8TAU0 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
NKX2-3Q8TAU0 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
NKX2-3Q8TAU0 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
NKX2-3Q8TAU0 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
NKX2-3Q8TAU0 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
NKX2-3Q8TAU0 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC6.3□□□□□ -1.4
NKX2-3Q8TAU0 Y_RNA.435-201ENST00000384095 112 ntBASIC6.3□□□□□ -1.4
NKX2-3Q8TAU0 SNORD56.6-201ENST00000384569 71 ntBASIC6.3□□□□□ -1.4
NKX2-3Q8TAU0 RNU6-131P-201ENST00000391144 107 ntBASIC6.3□□□□□ -1.4
NKX2-3Q8TAU0 RNA5SP111-201ENST00000411386 101 ntBASIC6.3□□□□□ -1.4
NKX2-3Q8TAU0 VTI1BP4-201ENST00000427516 527 ntBASIC6.3□□□□□ -1.4
NKX2-3Q8TAU0 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC6.3□□□□□ -1.4
NKX2-3Q8TAU0 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC6.3□□□□□ -1.4
NKX2-3Q8TAU0 ISCUP1-201ENST00000454451 448 ntBASIC6.3□□□□□ -1.4
NKX2-3Q8TAU0 RNU6-1218P-201ENST00000458990 108 ntBASIC6.3□□□□□ -1.4
NKX2-3Q8TAU0 PLGLA-201ENST00000465668 449 ntBASIC6.3□□□□□ -1.4
NKX2-3Q8TAU0 RN7SL188P-201ENST00000469842 285 ntBASIC6.3□□□□□ -1.4
NKX2-3Q8TAU0 AC010469.2-201ENST00000496412 480 ntBASIC6.3□□□□□ -1.4
NKX2-3Q8TAU0 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC6.3□□□□□ -1.4
NKX2-3Q8TAU0 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC6.3□□□□□ -1.4
NKX2-3Q8TAU0 AC100870.1-201ENST00000522035 505 ntBASIC6.3□□□□□ -1.4
NKX2-3Q8TAU0 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC6.3□□□□□ -1.4
NKX2-3Q8TAU0 EDDM3DP-201ENST00000554692 434 ntBASIC6.3□□□□□ -1.4
NKX2-3Q8TAU0 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC6.3□□□□□ -1.4
NKX2-3Q8TAU0 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
NKX2-3Q8TAU0 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
NKX2-3Q8TAU0 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
NKX2-3Q8TAU0 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC6.3□□□□□ -1.4
NKX2-3Q8TAU0 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC6.3□□□□□ -1.4
NKX2-3Q8TAU0 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
NKX2-3Q8TAU0 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
NKX2-3Q8TAU0 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.3□□□□□ -1.4
NKX2-3Q8TAU0 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
NKX2-3Q8TAU0 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 196.7 ms