Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC2.73□□□□□ -1.97
SKA3Q8IX90 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC2.73□□□□□ -1.97
SKA3Q8IX90 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.73□□□□□ -1.97
SKA3Q8IX90 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC2.73□□□□□ -1.97
SKA3Q8IX90 AC004866.2-201ENST00000438285 481 ntBASIC2.73□□□□□ -1.97
SKA3Q8IX90 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC2.73□□□□□ -1.97
SKA3Q8IX90 MTND1P31-201ENST00000449206 961 ntBASIC2.73□□□□□ -1.97
SKA3Q8IX90 AC140076.1-201ENST00000449897 361 ntBASIC2.73□□□□□ -1.97
SKA3Q8IX90 ZNF736P8Y-201ENST00000451913 669 ntBASIC2.73□□□□□ -1.97
SKA3Q8IX90 HMGB1P36-201ENST00000487709 576 ntBASIC2.73□□□□□ -1.97
SKA3Q8IX90 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC2.73□□□□□ -1.97
SKA3Q8IX90 AC098799.2-201ENST00000509466 868 ntBASIC2.73□□□□□ -1.97
SKA3Q8IX90 MTCYBP43-201ENST00000513621 740 ntBASIC2.73□□□□□ -1.97
SKA3Q8IX90 RNU6-56P-201ENST00000516986 93 ntBASIC2.73□□□□□ -1.97
SKA3Q8IX90 RNU6-711P-201ENST00000517255 106 ntBASIC2.73□□□□□ -1.97
SKA3Q8IX90 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC2.73□□□□□ -1.97
SKA3Q8IX90 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC2.73□□□□□ -1.97
SKA3Q8IX90 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC2.73□□□□□ -1.97
SKA3Q8IX90 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC2.73□□□□□ -1.97
SKA3Q8IX90 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC2.73□□□□□ -1.97
SKA3Q8IX90 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC2.73□□□□□ -1.97
SKA3Q8IX90 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC2.73□□□□□ -1.97
SKA3Q8IX90 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC2.73□□□□□ -1.97
SKA3Q8IX90 CASC16-202ENST00000563844 610 ntTSL 3 BASIC2.73□□□□□ -1.97
SKA3Q8IX90 MIR5004-201ENST00000579078 107 ntBASIC2.73□□□□□ -1.97
SKA3Q8IX90 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC2.73□□□□□ -1.97
SKA3Q8IX90 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC2.73□□□□□ -1.97
SKA3Q8IX90 AL391001.1-201ENST00000602747 715 ntBASIC2.73□□□□□ -1.97
SKA3Q8IX90 AL596327.1-201ENST00000603629 213 ntBASIC2.73□□□□□ -1.97
SKA3Q8IX90 AC025588.2-201ENST00000604851 466 ntBASIC2.73□□□□□ -1.97
SKA3Q8IX90 YPEL5P2-201ENST00000605553 359 ntBASIC2.73□□□□□ -1.97
SKA3Q8IX90 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC2.73□□□□□ -1.97
SKA3Q8IX90 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC2.73□□□□□ -1.97
SKA3Q8IX90 AC096577.2-201ENST00000611455 153 ntBASIC2.73□□□□□ -1.97
SKA3Q8IX90 AL359198.2-201ENST00000611836 194 ntBASIC2.73□□□□□ -1.97
SKA3Q8IX90 AL139418.1-201ENST00000613613 177 ntBASIC2.73□□□□□ -1.97
SKA3Q8IX90 AC068831.7-201ENST00000616954 363 ntBASIC2.73□□□□□ -1.97
SKA3Q8IX90 AC099506.2-201ENST00000623074 221 ntBASIC2.73□□□□□ -1.97
SKA3Q8IX90 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
SKA3Q8IX90 AC090617.7-201ENST00000623952 126 ntBASIC2.73□□□□□ -1.97
SKA3Q8IX90 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
SKA3Q8IX90 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC2.73□□□□□ -1.97
SKA3Q8IX90 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC2.73□□□□□ -1.97
SKA3Q8IX90 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
SKA3Q8IX90 THUMPD3P1-201ENST00000506556 1480 ntBASIC2.72□□□□□ -1.97
SKA3Q8IX90 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC2.72□□□□□ -1.97
SKA3Q8IX90 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
SKA3Q8IX90 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
SKA3Q8IX90 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC2.72□□□□□ -1.97
SKA3Q8IX90 MIR208A-201ENST00000362287 71 ntBASIC2.72□□□□□ -1.97
SKA3Q8IX90 RNU6-931P-201ENST00000363850 107 ntBASIC2.72□□□□□ -1.97
SKA3Q8IX90 RNU4-28P-201ENST00000364739 141 ntBASIC2.72□□□□□ -1.97
SKA3Q8IX90 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC2.72□□□□□ -1.97
SKA3Q8IX90 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
SKA3Q8IX90 RPS3AP24-201ENST00000407896 734 ntBASIC2.72□□□□□ -1.97
SKA3Q8IX90 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC2.72□□□□□ -1.97
SKA3Q8IX90 RPL7P10-201ENST00000417407 739 ntBASIC2.72□□□□□ -1.97
SKA3Q8IX90 TRAPPC2P4-201ENST00000421750 331 ntBASIC2.72□□□□□ -1.97
SKA3Q8IX90 XKRYP1-201ENST00000423438 492 ntBASIC2.72□□□□□ -1.97
SKA3Q8IX90 MTCO1P39-201ENST00000426148 480 ntBASIC2.72□□□□□ -1.97
SKA3Q8IX90 SAR1AP4-201ENST00000429225 591 ntBASIC2.72□□□□□ -1.97
SKA3Q8IX90 TXNL1P1-201ENST00000429528 554 ntBASIC2.72□□□□□ -1.97
SKA3Q8IX90 XKRYP2-201ENST00000432915 492 ntBASIC2.72□□□□□ -1.97
SKA3Q8IX90 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC2.72□□□□□ -1.97
SKA3Q8IX90 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC2.72□□□□□ -1.97
SKA3Q8IX90 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC2.72□□□□□ -1.97
SKA3Q8IX90 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC2.72□□□□□ -1.97
SKA3Q8IX90 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC2.72□□□□□ -1.97
SKA3Q8IX90 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC2.72□□□□□ -1.97
SKA3Q8IX90 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC2.72□□□□□ -1.97
SKA3Q8IX90 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC2.72□□□□□ -1.97
SKA3Q8IX90 AC017015.1-201ENST00000477387 286 ntBASIC2.72□□□□□ -1.97
SKA3Q8IX90 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC2.72□□□□□ -1.97
SKA3Q8IX90 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC2.72□□□□□ -1.97
SKA3Q8IX90 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC2.72□□□□□ -1.97
SKA3Q8IX90 AC105914.1-201ENST00000511798 226 ntBASIC2.72□□□□□ -1.97
SKA3Q8IX90 AC024589.1-201ENST00000512207 263 ntBASIC2.72□□□□□ -1.97
SKA3Q8IX90 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC2.72□□□□□ -1.97
SKA3Q8IX90 RNA5SP76-201ENST00000516277 87 ntBASIC2.72□□□□□ -1.97
SKA3Q8IX90 RNU6-714P-201ENST00000516963 103 ntBASIC2.72□□□□□ -1.97
SKA3Q8IX90 MRPS36P3-201ENST00000519284 130 ntBASIC2.72□□□□□ -1.97
SKA3Q8IX90 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.72□□□□□ -1.97
SKA3Q8IX90 EEF1A1P37-201ENST00000522748 715 ntBASIC2.72□□□□□ -1.97
SKA3Q8IX90 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC2.72□□□□□ -1.97
SKA3Q8IX90 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC2.72□□□□□ -1.97
SKA3Q8IX90 MED28P6-201ENST00000558776 231 ntBASIC2.72□□□□□ -1.97
SKA3Q8IX90 AL354943.1-201ENST00000572103 781 ntBASIC2.72□□□□□ -1.97
SKA3Q8IX90 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC2.72□□□□□ -1.97
SKA3Q8IX90 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC2.72□□□□□ -1.97
SKA3Q8IX90 AL031281.1-201ENST00000604049 488 ntBASIC2.72□□□□□ -1.97
SKA3Q8IX90 AC012443.1-201ENST00000605605 231 ntBASIC2.72□□□□□ -1.97
SKA3Q8IX90 AC103706.2-201ENST00000638080 240 ntBASIC2.72□□□□□ -1.97
SKA3Q8IX90 MIR622-201ENST00000638396 96 ntBASIC2.72□□□□□ -1.97
SKA3Q8IX90 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.72□□□□□ -1.97
SKA3Q8IX90 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
SKA3Q8IX90 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.72□□□□□ -1.97
SKA3Q8IX90 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.97
SKA3Q8IX90 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
SKA3Q8IX90 Y_RNA.548-201ENST00000384656 105 ntBASIC2.71□□□□□ -1.98
SKA3Q8IX90 SNORD67-201ENST00000390833 111 ntBASIC2.71□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 78.7 ms