Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC2.18□□□□□ -2.06
COL5A3P25940 FABP5P6-201ENST00000510588 409 ntBASIC2.18□□□□□ -2.06
COL5A3P25940 AC092436.3-201ENST00000511788 257 ntBASIC2.18□□□□□ -2.06
COL5A3P25940 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.18□□□□□ -2.06
COL5A3P25940 AC103987.3-201ENST00000582071 292 ntBASIC2.18□□□□□ -2.06
COL5A3P25940 OR4H6P-202ENST00000603819 340 ntBASIC2.18□□□□□ -2.06
COL5A3P25940 AL121917.1-203ENST00000605534 577 ntBASIC2.18□□□□□ -2.06
COL5A3P25940 MIR502-201ENST00000606349 86 ntBASIC2.18□□□□□ -2.06
COL5A3P25940 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC2.18□□□□□ -2.06
COL5A3P25940 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
COL5A3P25940 AC091948.2-201ENST00000636510 279 ntBASIC2.18□□□□□ -2.06
COL5A3P25940 AC096656.1-201ENST00000623826 1364 ntBASIC2.18□□□□□ -2.06
COL5A3P25940 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC2.18□□□□□ -2.06
COL5A3P25940 CKAP2P1-201ENST00000555477 2049 ntBASIC2.18□□□□□ -2.06
COL5A3P25940 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.18□□□□□ -2.06
COL5A3P25940 RNU4-13P-201ENST00000364019 141 ntBASIC2.17□□□□□ -2.06
COL5A3P25940 RNA5SP138-201ENST00000365098 114 ntBASIC2.17□□□□□ -2.06
COL5A3P25940 CUBN-201ENST00000377823 705 ntTSL 3 BASIC2.17□□□□□ -2.06
COL5A3P25940 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC2.17□□□□□ -2.06
COL5A3P25940 RNU6-40P-201ENST00000384254 107 ntBASIC2.17□□□□□ -2.06
COL5A3P25940 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
COL5A3P25940 AC013404.1-201ENST00000413068 249 ntBASIC2.17□□□□□ -2.06
COL5A3P25940 RPS7P9-201ENST00000414704 586 ntBASIC2.17□□□□□ -2.06
COL5A3P25940 NDUFA5P10-201ENST00000432147 357 ntBASIC2.17□□□□□ -2.06
COL5A3P25940 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC2.17□□□□□ -2.06
COL5A3P25940 MTATP6P22-201ENST00000507369 598 ntBASIC2.17□□□□□ -2.06
COL5A3P25940 HMGB1P47-201ENST00000511281 589 ntBASIC2.17□□□□□ -2.06
COL5A3P25940 MTND2P31-201ENST00000512602 616 ntBASIC2.17□□□□□ -2.06
COL5A3P25940 BX248123.2-201ENST00000606318 124 ntBASIC2.17□□□□□ -2.06
COL5A3P25940 AC135803.1-201ENST00000608748 565 ntBASIC2.17□□□□□ -2.06
COL5A3P25940 AC012360.2-201ENST00000609349 391 ntBASIC2.17□□□□□ -2.06
COL5A3P25940 AC055764.2-201ENST00000610089 670 ntBASIC2.17□□□□□ -2.06
COL5A3P25940 AL590099.1-201ENST00000615276 138 ntBASIC2.17□□□□□ -2.06
COL5A3P25940 AC090617.7-201ENST00000623952 126 ntBASIC2.17□□□□□ -2.06
COL5A3P25940 MTND4P23-201ENST00000447723 1363 ntBASIC2.17□□□□□ -2.06
COL5A3P25940 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC2.17□□□□□ -2.06
COL5A3P25940 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.17□□□□□ -2.06
COL5A3P25940 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
COL5A3P25940 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.17□□□□□ -2.06
COL5A3P25940 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.17□□□□□ -2.06
COL5A3P25940 VTRNA1-1-201ENST00000363120 99 ntBASIC2.17□□□□□ -2.06
COL5A3P25940 CCNB2P1-201ENST00000399411 1150 ntBASIC2.17□□□□□ -2.06
COL5A3P25940 USP9YP19-201ENST00000412165 485 ntBASIC2.17□□□□□ -2.06
COL5A3P25940 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC2.17□□□□□ -2.06
COL5A3P25940 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
COL5A3P25940 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
COL5A3P25940 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
COL5A3P25940 AL645568.3-201ENST00000433683 316 ntBASIC2.17□□□□□ -2.06
COL5A3P25940 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC2.17□□□□□ -2.06
COL5A3P25940 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC2.17□□□□□ -2.06
COL5A3P25940 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC2.17□□□□□ -2.06
COL5A3P25940 ARL4AP2-201ENST00000507378 601 ntBASIC2.17□□□□□ -2.06
COL5A3P25940 OR8K2P-201ENST00000524645 927 ntBASIC2.17□□□□□ -2.06
COL5A3P25940 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC2.17□□□□□ -2.06
COL5A3P25940 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC2.17□□□□□ -2.06
COL5A3P25940 PRELID2P1-201ENST00000552837 301 ntBASIC2.17□□□□□ -2.06
COL5A3P25940 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC2.17□□□□□ -2.06
COL5A3P25940 AL049870.4-201ENST00000555741 486 ntBASIC2.17□□□□□ -2.06
COL5A3P25940 AC104581.2-201ENST00000572227 430 ntBASIC2.17□□□□□ -2.06
COL5A3P25940 DUXAP3-201ENST00000603616 594 ntBASIC2.17□□□□□ -2.06
COL5A3P25940 AL645939.4-201ENST00000604495 135 ntBASIC2.17□□□□□ -2.06
COL5A3P25940 AC090525.3-201ENST00000605601 189 ntBASIC2.17□□□□□ -2.06
COL5A3P25940 MIR1264-201ENST00000616374 69 ntBASIC2.17□□□□□ -2.06
COL5A3P25940 AC073592.7-201ENST00000623659 507 ntBASIC2.17□□□□□ -2.06
COL5A3P25940 AC015726.3-201ENST00000624501 418 ntBASIC2.17□□□□□ -2.06
COL5A3P25940 AP000553.5-201ENST00000641933 54 ntBASIC2.17□□□□□ -2.06
COL5A3P25940 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC2.16□□□□□ -2.06
COL5A3P25940 AC002546.1-201ENST00000588041 2504 ntBASIC2.16□□□□□ -2.06
COL5A3P25940 RPL31P52-201ENST00000407532 367 ntBASIC2.16□□□□□ -2.06
COL5A3P25940 AC019070.1-201ENST00000415008 1024 ntBASIC2.16□□□□□ -2.06
COL5A3P25940 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC2.16□□□□□ -2.06
COL5A3P25940 MTCO3P43-201ENST00000440974 771 ntBASIC2.16□□□□□ -2.06
COL5A3P25940 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC2.16□□□□□ -2.06
COL5A3P25940 AC073901.1-201ENST00000462471 408 ntBASIC2.16□□□□□ -2.06
COL5A3P25940 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC2.16□□□□□ -2.06
COL5A3P25940 AC108157.1-201ENST00000510511 539 ntBASIC2.16□□□□□ -2.06
COL5A3P25940 AP003168.1-201ENST00000530091 307 ntBASIC2.16□□□□□ -2.06
COL5A3P25940 AC012414.2-201ENST00000559474 187 ntBASIC2.16□□□□□ -2.06
COL5A3P25940 MTND4LP24-201ENST00000572277 291 ntBASIC2.16□□□□□ -2.06
COL5A3P25940 AP005136.1-201ENST00000579765 429 ntBASIC2.16□□□□□ -2.06
COL5A3P25940 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
COL5A3P25940 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.16□□□□□ -2.06
COL5A3P25940 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.15□□□□□ -2.06
COL5A3P25940 MTND4P34-201ENST00000572715 1371 ntBASIC2.15□□□□□ -2.06
COL5A3P25940 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.15□□□□□ -2.06
COL5A3P25940 RNY1P14-201ENST00000384426 108 ntBASIC2.15□□□□□ -2.07
COL5A3P25940 AL121972.1-201ENST00000402023 252 ntBASIC2.15□□□□□ -2.07
COL5A3P25940 AC004965.1-201ENST00000413033 213 ntBASIC2.15□□□□□ -2.07
COL5A3P25940 AC234782.4-201ENST00000417646 1048 ntBASIC2.15□□□□□ -2.07
COL5A3P25940 MTND4P24-201ENST00000424002 397 ntBASIC2.15□□□□□ -2.07
COL5A3P25940 ZNF965P-201ENST00000432501 817 ntBASIC2.15□□□□□ -2.07
COL5A3P25940 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC2.15□□□□□ -2.07
COL5A3P25940 MED6P1-201ENST00000439659 713 ntBASIC2.15□□□□□ -2.07
COL5A3P25940 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC2.15□□□□□ -2.07
COL5A3P25940 AC017099.1-201ENST00000448261 1028 ntBASIC2.15□□□□□ -2.07
COL5A3P25940 AC078918.1-201ENST00000498515 228 ntBASIC2.15□□□□□ -2.07
COL5A3P25940 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC2.15□□□□□ -2.07
COL5A3P25940 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC2.15□□□□□ -2.07
COL5A3P25940 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.15□□□□□ -2.07
COL5A3P25940 RNU6-1308P-201ENST00000516817 103 ntBASIC2.15□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 95.8 ms