Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC6.07□□□□□ -1.44
COL9A1P20849 AC091193.1-201ENST00000604640 448 ntBASIC6.07□□□□□ -1.44
COL9A1P20849 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL9A1P20849 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL9A1P20849 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC6.07□□□□□ -1.44
COL9A1P20849 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC6.07□□□□□ -1.44
COL9A1P20849 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC6.07□□□□□ -1.44
COL9A1P20849 AP2B1-215ENST00000616681 3267 ntTSL 2 BASIC6.07□□□□□ -1.44
COL9A1P20849 NCAPGP1-201ENST00000505112 1814 ntBASIC6.06□□□□□ -1.44
COL9A1P20849 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL9A1P20849 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL9A1P20849 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
COL9A1P20849 AL731556.1-201ENST00000394628 3711 ntBASIC6.06□□□□□ -1.44
COL9A1P20849 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC6.06□□□□□ -1.44
COL9A1P20849 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC6.06□□□□□ -1.44
COL9A1P20849 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL9A1P20849 Y_RNA.182-201ENST00000363880 111 ntBASIC6.06□□□□□ -1.44
COL9A1P20849 SNORD115-32-201ENST00000364079 82 ntBASIC6.06□□□□□ -1.44
COL9A1P20849 RNU6-1175P-201ENST00000365200 107 ntBASIC6.06□□□□□ -1.44
COL9A1P20849 BTF3L4P2-201ENST00000392798 346 ntBASIC6.06□□□□□ -1.44
COL9A1P20849 RNA5SP56-201ENST00000410277 118 ntBASIC6.06□□□□□ -1.44
COL9A1P20849 RNU2-2P-201ENST00000410396 191 ntBASIC6.06□□□□□ -1.44
COL9A1P20849 RNU6-1025P-201ENST00000410629 104 ntBASIC6.06□□□□□ -1.44
COL9A1P20849 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC6.06□□□□□ -1.44
COL9A1P20849 AL451136.1-201ENST00000435399 325 ntBASIC6.06□□□□□ -1.44
COL9A1P20849 AC074290.1-201ENST00000448883 135 ntBASIC6.06□□□□□ -1.44
COL9A1P20849 RNU6-1211P-201ENST00000459179 105 ntBASIC6.06□□□□□ -1.44
COL9A1P20849 RN7SL189P-201ENST00000468631 289 ntBASIC6.06□□□□□ -1.44
COL9A1P20849 RNU6-1234P-201ENST00000516877 103 ntBASIC6.06□□□□□ -1.44
COL9A1P20849 IGHV1-14-201ENST00000523391 241 ntBASIC6.06□□□□□ -1.44
COL9A1P20849 HMGN2P36-201ENST00000529541 409 ntBASIC6.06□□□□□ -1.44
COL9A1P20849 AC010928.2-201ENST00000588017 287 ntBASIC6.06□□□□□ -1.44
COL9A1P20849 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC6.06□□□□□ -1.44
COL9A1P20849 RNU2-4P-201ENST00000606190 192 ntBASIC6.06□□□□□ -1.44
COL9A1P20849 U2.15-201ENST00000611544 191 ntBASIC6.06□□□□□ -1.44
COL9A1P20849 U2.16-201ENST00000613119 191 ntBASIC6.06□□□□□ -1.44
COL9A1P20849 U2.12-201ENST00000613778 191 ntBASIC6.06□□□□□ -1.44
COL9A1P20849 U2.9-201ENST00000615427 191 ntBASIC6.06□□□□□ -1.44
COL9A1P20849 U2.11-201ENST00000616345 191 ntBASIC6.06□□□□□ -1.44
COL9A1P20849 U2.2-201ENST00000616535 191 ntBASIC6.06□□□□□ -1.44
COL9A1P20849 U2.3-201ENST00000617785 191 ntBASIC6.06□□□□□ -1.44
COL9A1P20849 U2.19-201ENST00000618602 191 ntBASIC6.06□□□□□ -1.44
COL9A1P20849 RNU2-1-201ENST00000618664 191 ntBASIC6.06□□□□□ -1.44
COL9A1P20849 U2.6-201ENST00000619225 191 ntBASIC6.06□□□□□ -1.44
COL9A1P20849 U2.5-201ENST00000619465 191 ntBASIC6.06□□□□□ -1.44
COL9A1P20849 U2.10-201ENST00000620268 191 ntBASIC6.06□□□□□ -1.44
COL9A1P20849 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC6.06□□□□□ -1.44
COL9A1P20849 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL9A1P20849 ACSL5-203ENST00000356116 3353 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
COL9A1P20849 IBTK-201ENST00000306270 6054 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL9A1P20849 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL9A1P20849 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC6.06□□□□□ -1.44
COL9A1P20849 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
COL9A1P20849 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
COL9A1P20849 LINC01109-201ENST00000603837 3081 ntBASIC6.06□□□□□ -1.44
COL9A1P20849 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
COL9A1P20849 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL9A1P20849 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC6.06□□□□□ -1.44
COL9A1P20849 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
COL9A1P20849 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL9A1P20849 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
COL9A1P20849 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL9A1P20849 CNKSR3-205ENST00000607772 21063 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
COL9A1P20849 AC110373.1-201ENST00000505994 3505 ntBASIC6.05□□□□□ -1.44
COL9A1P20849 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL9A1P20849 HERC2-201ENST00000261609 15337 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL9A1P20849 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL9A1P20849 MDM4-204ENST00000367183 9098 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL9A1P20849 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC6.05□□□□□ -1.44
COL9A1P20849 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL9A1P20849 ADGRL3-207ENST00000507625 4843 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
COL9A1P20849 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
COL9A1P20849 CYP3A5-202ENST00000339843 3320 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL9A1P20849 SNORA63.4-201ENST00000362763 126 ntBASIC6.05□□□□□ -1.44
COL9A1P20849 RNA5SP197-201ENST00000363357 119 ntBASIC6.05□□□□□ -1.44
COL9A1P20849 RNU6-76P-201ENST00000384060 104 ntBASIC6.05□□□□□ -1.44
COL9A1P20849 RNU6-20P-201ENST00000384106 107 ntBASIC6.05□□□□□ -1.44
COL9A1P20849 RNA5SP91-201ENST00000390902 119 ntBASIC6.05□□□□□ -1.44
COL9A1P20849 AL022722.2-201ENST00000402519 180 ntBASIC6.05□□□□□ -1.44
COL9A1P20849 AL357075.1-201ENST00000404107 726 ntBASIC6.05□□□□□ -1.44
COL9A1P20849 MIR1250-201ENST00000408098 113 ntBASIC6.05□□□□□ -1.44
COL9A1P20849 RNU6ATAC18P-201ENST00000408413 101 ntBASIC6.05□□□□□ -1.44
COL9A1P20849 AL158156.1-201ENST00000422509 473 ntBASIC6.05□□□□□ -1.44
COL9A1P20849 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC6.05□□□□□ -1.44
COL9A1P20849 RPS5P7-201ENST00000456664 608 ntBASIC6.05□□□□□ -1.44
COL9A1P20849 RNU6-567P-201ENST00000516746 107 ntBASIC6.05□□□□□ -1.44
COL9A1P20849 IGLV3-30-201ENST00000524362 298 ntBASIC6.05□□□□□ -1.44
COL9A1P20849 MIR4284-201ENST00000578924 81 ntBASIC6.05□□□□□ -1.44
COL9A1P20849 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC6.05□□□□□ -1.44
COL9A1P20849 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC6.05□□□□□ -1.44
COL9A1P20849 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC6.05□□□□□ -1.44
COL9A1P20849 MIER3-205ENST00000409421 2152 ntTSL 2 BASIC6.05□□□□□ -1.44
COL9A1P20849 IFT74-204ENST00000443698 2163 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
COL9A1P20849 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC6.05□□□□□ -1.44
COL9A1P20849 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC6.05□□□□□ -1.44
COL9A1P20849 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC6.05□□□□□ -1.44
COL9A1P20849 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC6.05□□□□□ -1.44
COL9A1P20849 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC6.05□□□□□ -1.44
COL9A1P20849 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL9A1P20849 MDM4-215ENST00000614459 9782 ntTSL 5 BASIC6.05□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 142.4 ms